From e05656d57668688b971c28e32b4cfd4d3eac4662 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 13:03:50 +0200 Subject: Correct and rebuild docs - Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown --- docs/reference/mkinmod.html | 32 +++++++++++++++++++++----------- 1 file changed, 21 insertions(+), 11 deletions(-) (limited to 'docs/reference/mkinmod.html') diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 16f80fe0..81fed454 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -16,13 +16,15 @@ - + + - - + + + @@ -52,6 +54,7 @@ For the definition of model types and their parameters, the equations given + @@ -121,6 +124,7 @@ For the definition of model types and their parameters, the equations given +
@@ -220,21 +224,22 @@ For the definition of model types and their parameters, the equations given

Examples

# Specify the SFO model (this is not needed any more, as we can now mkinfit("SFO", ...)
-SFO <- mkinmod(parent = list(type = "SFO"))
+SFO <- mkinmod(parent = list(type = "SFO"))
 
 # One parent compound, one metabolite, both single first order
 SFO_SFO <- mkinmod(
   parent = mkinsub("SFO", "m1"),
   m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.

-
# The above model used to be specified like this, before the advent of mkinsub()
+# \dontrun{
+# The above model used to be specified like this, before the advent of mkinsub()
 SFO_SFO <- mkinmod(
-  parent = list(type = "SFO", to = "m1"),
-  m1 = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.

+  parent = list(type = "SFO", to = "m1"),
+  m1 = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.

 # Show details of creating the C function
 SFO_SFO <- mkinmod(
   parent = mkinsub("SFO", "m1"),
   m1 = mkinsub("SFO"), verbose = TRUE)
#> Compilation argument:
-#>  /usr/lib/R/bin/R CMD SHLIB file37c428e02a2c.c 2> file37c428e02a2c.c.err.txt 
+#>  /usr/lib/R/bin/R CMD SHLIB file419a1fa6c394.c 2> file419a1fa6c394.c.err.txt 
 #> Program source:
 #>   1: #include <R.h>
 #>   2: 
@@ -257,14 +262,15 @@ For the definition of model types and their parameters, the equations given
 #>  19: }
#> Successfully compiled differential equation model from auto-generated C code.

 # If we have several parallel metabolites 
 # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)
-m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
+m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
                            M1 = mkinsub("SFO"),
                            M2 = mkinsub("SFO"),
                            use_of_ff = "max", quiet = TRUE)
 
 fit_DFOP_par_c <- mkinfit(m_synth_DFOP_par,
                           synthetic_data_for_UBA_2014[[12]]$data,
-                          quiet = TRUE)
+ quiet = TRUE) +# }
+ + + -- cgit v1.2.1