From 9ac853c7ceece333099021974025d07e75be2b33 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 12 May 2020 08:07:07 +0200 Subject: Documentation improvements, rebuild static docs --- docs/reference/mmkin.html | 79 ++++++++++++++++++++++++----------------------- 1 file changed, 40 insertions(+), 39 deletions(-) (limited to 'docs/reference/mmkin.html') diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index c1f62be7..db359f48 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -11,23 +11,27 @@ more datasets — mmkin • mkin - + - + - + + + + + - - + + - + - - + + @@ -40,7 +44,6 @@ more datasets — mmkin • mkin more datasets — mmkin" /> - @@ -58,7 +61,7 @@ datasets specified in its first two arguments." /> - +
@@ -116,7 +119,12 @@ datasets specified in its first two arguments." />
@@ -132,7 +140,7 @@ datasets specified in its first two arguments." />

Fit one or more kinetic models with one or more state variables to one or more datasets

- + Source: R/mmkin.R
@@ -184,12 +192,12 @@ for parallel execution.

Value

A two-dimensional array of mkinfit - objects that can be indexed using the model names for the first index (row index) - and the dataset names for the second index (column index).

+objects that can be indexed using the model names for the first index (row index) +and the dataset names for the second index (column index).

See also

[.mmkin for subsetting, plot.mmkin for - plotting.

+plotting.

Examples


@@ -205,42 +213,35 @@ for parallel execution.

 names(datasets) <- paste("Dataset", 1:3)
 
 time_default <- system.time(fits.0 <- mmkin(models, datasets, quiet = TRUE))
-time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE))
-
+time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE))
#> Warning: Optimisation did not converge:
+#> false convergence (8)

 time_default
#>        User      System verstrichen 
-#>      16.471       0.352       5.654 
time_1
#>        User      System verstrichen 
-#>      19.578       0.000      19.590 

+#>       4.370       0.401       1.265 
time_1
#>        User      System verstrichen 
+#>       5.000       0.008       5.011 

 endpoints(fits.0[["SFO_lin", 2]])
#> $ff
 #>   parent_M1 parent_sink       M1_M2     M1_sink 
-#>   0.7340480   0.2659520   0.7505686   0.2494314 
+#>   0.7340478   0.2659522   0.7505691   0.2494309 
 #> 
 #> $distimes
 #>              DT50       DT90
-#> parent  0.8777689   2.915885
-#> M1      2.3257452   7.725958
-#> M2     33.7200890 112.015711
+#> parent  0.8777688   2.915885
+#> M1      2.3257466   7.725963
+#> M2     33.7200800 112.015681
 #> 

 # plot.mkinfit handles rows or columns of mmkin result objects
-plot(fits.0[1, ])
plot(fits.0[1, ], obs_var = c("M1", "M2"))
plot(fits.0[, 1])
# Use double brackets to extract a single mkinfit object, which will be plotted
+plot(fits.0[1, ])
plot(fits.0[1, ], obs_var = c("M1", "M2"))
plot(fits.0[, 1])
# Use double brackets to extract a single mkinfit object, which will be plotted
 # by plot.mkinfit and can be plotted using plot_sep
-plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
plot_sep(fits.0[[1, 1]])
+plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
plot_sep(fits.0[[1, 1]])
 # Plotting with mmkin (single brackets, extracting an mmkin object) does not
 # allow to plot the observed variables separately
-plot(fits.0[1, 1])
# }
+plot(fits.0[1, 1])
# }
- @@ -251,7 +252,7 @@ for parallel execution.

-

Site built with pkgdown 1.4.1.

+

Site built with pkgdown 1.5.1.

-- cgit v1.2.1