From e05656d57668688b971c28e32b4cfd4d3eac4662 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 13:03:50 +0200 Subject: Correct and rebuild docs - Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown --- docs/reference/mmkin.html | 44 +++++++++++++++++++++++++++----------------- 1 file changed, 27 insertions(+), 17 deletions(-) (limited to 'docs/reference/mmkin.html') diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index 49860cbe..9bb7926b 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -16,13 +16,15 @@ - + + - - + + + @@ -48,6 +50,7 @@ + @@ -117,6 +120,7 @@ +
@@ -135,7 +139,7 @@ 
mmkin(models, datasets,
-      cores = round(detectCores()/2), cluster = NULL, ...)
+ cores = round(detectCores()/2), cluster = NULL, ...)

Arguments

@@ -164,7 +168,7 @@ execution.

- +
…...

Further arguments that will be passed to mkinfit.
@@ -180,22 +184,23 @@

Examples

- 
m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
+    
# \dontrun{
+m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
                            M1 = mkinsub("SFO", "M2"),
                            M2 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.

 m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),
                             M1 = mkinsub("SFO", "M2"),
                             M2 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.

-models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
-datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
-names(datasets) <- paste("Dataset", 1:3)
+models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
+datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
+names(datasets) <- paste("Dataset", 1:3)
 
-time_default <- system.time(fits.0 <- mmkin(models, datasets, quiet = TRUE))
-time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE))
+time_default <- system.time(fits.0 <- mmkin(models, datasets, quiet = TRUE))
+time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE))
 
 time_default
#>        User      System verstrichen 
-#>       0.045       0.038       5.672 
time_1
#>        User      System verstrichen 
-#>      20.914       0.000      20.928 

+#>       0.012       0.024       5.064 
time_1
#>        User      System verstrichen 
+#>      19.094       0.000      19.104 

 endpoints(fits.0[["SFO_lin", 2]])
#> $ff
 #>   parent_M1 parent_sink       M1_M2     M1_sink 
 #>   0.7340481   0.2659519   0.7505684   0.2494316 
@@ -210,12 +215,13 @@
 #> M2     33.7200958 112.015734
 #> 

 # plot.mkinfit handles rows or columns of mmkin result objects
-plot(fits.0[1, ])
plot(fits.0[1, ], obs_var = c("M1", "M2"))
plot(fits.0[, 1])
# Use double brackets to extract a single mkinfit object, which will be plotted
+plot(fits.0[1, ])
plot(fits.0[1, ], obs_var = c("M1", "M2"))
plot(fits.0[, 1])
# Use double brackets to extract a single mkinfit object, which will be plotted
 # by plot.mkinfit and can be plotted using plot_sep
-plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
plot_sep(fits.0[[1, 1]])
+plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
plot_sep(fits.0[[1, 1]])
 # Plotting with mmkin (single brackets, extracting an mmkin object) does not
 # allow to plot the observed variables separately
-plot(fits.0[1, 1])

+plot(fits.0[1, 1])
# }
+
+ + + -- cgit v1.2.1