From b6e278759127dab5bb78bc3016926a66e8a9758f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 14 May 2020 17:10:59 +0200 Subject: Test markdown link, article update due to .rmd extension --- docs/reference/nlme.html | 25 ++++++++++++++----------- 1 file changed, 14 insertions(+), 11 deletions(-) (limited to 'docs/reference/nlme.html') diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html index 8ef7e7c9..b2d415dc 100644 --- a/docs/reference/nlme.html +++ b/docs/reference/nlme.html @@ -43,7 +43,7 @@ +datasets. They are used internally by the nlme.mmkin() method." /> @@ -112,6 +112,9 @@ datasets." />
  • Example evaluation of NAFTA SOP Attachment examples
    • +
  • + Some benchmark timings +
  • @@ -147,7 +150,7 @@ datasets." />

    These functions facilitate setting up a nonlinear mixed effects model for an mmkin row object. An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of -datasets.

    +datasets. They are used internally by the nlme.mmkin() method.

    nlme_function(object)
@@ -222,28 +225,28 @@ nlme for the case of a single grouping variable ds?
    
 #>   Model: value ~ nlme_f(name, time, parent_0, log_k_parent_sink) 
 #>  Data: grouped_data 
 #>        AIC      BIC    logLik
-#>   252.7798 262.1358 -121.3899
+#>   298.2781 307.7372 -144.1391
 #> 
 #> Random effects:
 #>  Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1)
 #>  Level: ds
 #>  Structure: Diagonal
-#>             parent_0 log_k_parent_sink Residual
-#> StdDev: 0.0006768135         0.6800777 2.489397
+#>          parent_0 log_k_parent_sink Residual
+#> StdDev: 0.9374733         0.7098105  3.83543
 #> 
 #> Fixed effects: parent_0 + log_k_parent_sink ~ 1 
-#>                       Value Std.Error DF   t-value p-value
-#> parent_0          101.74884 0.6456014 44 157.60321       0
-#> log_k_parent_sink  -3.05575 0.4015811 44  -7.60929       0
+#>                       Value Std.Error DF  t-value p-value
+#> parent_0          101.76838 1.1445444 45 88.91606       0
+#> log_k_parent_sink  -3.05444 0.4195622 45 -7.28008       0
 #>  Correlation: 
 #>                   prnt_0
-#> log_k_parent_sink 0.026 
+#> log_k_parent_sink 0.034 
 #> 
 #> Standardized Within-Group Residuals:
 #>        Min         Q1        Med         Q3        Max 
-#> -2.1317488 -0.6878121  0.0828385  0.8592270  2.9529864 
+#> -2.6169360 -0.2185329  0.0574070  0.5720937  3.0459868 
 #> 
-#> Number of Observations: 48
+#> Number of Observations: 49
 #> Number of Groups: 3 
    plot(augPred(m_nlme, level = 0:1), layout = c(3, 1))
    # augPred does not seem to work on fits with more than one state
 # variable
 
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