From 39b2c2c762b03922a2648b1b226d0f308600cc87 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jun 2018 01:24:15 +0200 Subject: Static documentation rebuilt by pkgdown 1.1.0 --- docs/reference/plot.mkinfit.html | 35 ++++++++++++++++++++++++++--------- 1 file changed, 26 insertions(+), 9 deletions(-) (limited to 'docs/reference/plot.mkinfit.html') diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html index 319ba75b..525a8453 100644 --- a/docs/reference/plot.mkinfit.html +++ b/docs/reference/plot.mkinfit.html @@ -21,12 +21,15 @@ + + + - - - + + + + + + @@ -58,8 +64,12 @@ If the current plot device is a tikz device, - mkin + + mkin + 0.9.47.1 + + @@ -107,12 +118,15 @@ If the current plot device is a tikz device, -
+

Plot the observed data and the fitted model of an mkinfit object

+ +
+

Solves the differential equations with the optimised and fixed parameters from a previous successful call to mkinfit and plots @@ -121,6 +135,7 @@ If the current plot device is a tikz device, then latex is being used for the formatting of the chi2 error level, if show_errmin = TRUE.

+ 
# S3 method for mkinfit
 plot(x, fit = x,
@@ -137,7 +152,7 @@ plot(x, fit = x,
   show_errmin = FALSE, errmin_digits = 3, …)
 plot_sep(fit, sep_obs = TRUE,  show_residuals = TRUE, show_errmin = TRUE, …)
-

Arguments

+

Arguments

@@ -244,12 +259,12 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, … # parent to sink included, use Levenberg-Marquardt for speedSFO_SFO<-mkinmod(parent=mkinsub("SFO", "m1", full="Parent"), m1=mkinsub("SFO", full="Metabolite M1" ))
#> Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq") -plot(fit)
plot(fit, show_residuals = TRUE)
+plot(fit)
plot(fit, show_residuals = TRUE)
# Show the observed variables separately -plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))
+plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))
# Show the observed variables separately, with residuals plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomright"), - show_errmin = TRUE)
+ show_errmin = TRUE)
# The same can be obtained with less typing, using the convenience function plot_sep plot_sep(fit, lpos = c("topright", "bottomright"))
@@ -282,6 +297,8 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, … + + -- cgit v1.2.1