From 3eefecf0adfbb30b8fb895c244dea6903bcb3e9c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 31 Jan 2019 16:55:20 +0100 Subject: Restore NAMESPACE which was accidentally overwritten by pkgdown -> roxygen --- docs/reference/plot.mkinfit.html | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) (limited to 'docs/reference/plot.mkinfit.html') diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html index 0630c604..ab94d61b 100644 --- a/docs/reference/plot.mkinfit.html +++ b/docs/reference/plot.mkinfit.html @@ -260,14 +260,15 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, … 
# One parent compound, one metabolite, both single first order, path from
 # parent to sink included, use Levenberg-Marquardt for speed
 SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
-                   m1 = mkinsub("SFO", full = "Metabolite M1" ))
#> Error in mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"), m1 = mkinsub("SFO",     full = "Metabolite M1")): konnte Funktion "mkinmod" nicht finden
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq")
#> Error in mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq"): konnte Funktion "mkinfit" nicht finden
plot(fit)
#> Error in plot(fit): Objekt 'fit' nicht gefunden
plot(fit, show_residuals = TRUE)
#> Error in plot(fit, show_residuals = TRUE): Objekt 'fit' nicht gefunden

+                   m1 = mkinsub("SFO", full = "Metabolite M1" ))
#> Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq")
+plot(fit)
plot(fit, show_residuals = TRUE)

 # Show the observed variables separately
-plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))
#> Error in plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright")): Objekt 'fit' nicht gefunden

+plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))

 # Show the observed variables separately, with residuals
 plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomright"),
-     show_errmin = TRUE)
#> Error in plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright",     "bottomright"), show_errmin = TRUE): Objekt 'fit' nicht gefunden

+     show_errmin = TRUE)

 # The same can be obtained with less typing, using the convenience function plot_sep
-plot_sep(fit, lpos = c("topright", "bottomright"))
#> Error in plot_sep(fit, lpos = c("topright", "bottomright")): konnte Funktion "plot_sep" nicht finden
+plot_sep(fit, lpos = c("topright", "bottomright"))