From 8f38147e145c66ebd27f5d9fcc6f00172c25872f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 26 Oct 2016 23:18:20 +0200 Subject: Static documentation rebuilt by pkgdown::build_site() --- docs/reference/plot.mkinfit.html | 72 +++++++++++++++++++++++++--------------- 1 file changed, 46 insertions(+), 26 deletions(-) (limited to 'docs/reference/plot.mkinfit.html') diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html index 94aebf63..631ea429 100644 --- a/docs/reference/plot.mkinfit.html +++ b/docs/reference/plot.mkinfit.html @@ -6,14 +6,14 @@ -plot.mkinfit. mkin + + — plot.mkinfit • mkin - - + @@ -22,6 +22,7 @@ + @@ -34,10 +35,9 @@ -
+
- -
-
-

+
+
+
+

-
+
-
-

Solves the differential equations with the optimised and fixed parameters - from a previous successful call to mkinfit and plots + from a previous successful call to mkinfit and plots the observed data together with the solution of the fitted model.

@@ -98,7 +100,7 @@ plot(x, fit = x, show_errmin = FALSE, errmin_digits = 3, …) plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, …) -

Arguments

+

Arguments

x
@@ -106,7 +108,7 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, …
fit
- An object of class mkinfit. + An object of class mkinfit.
obs_vars
@@ -194,27 +196,38 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, …
-
-

Value

+

Value

-

The function is called for its side effect.

-
+

The function is called for its side effect.

-

Examples

+ +

+ + Examples + 

# One parent compound, one metabolite, both single first order, path from
 # parent to sink included, use Levenberg-Marquardt for speed
-SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
-                   m1 = mkinsub("SFO", full = "Metabolite M1" ))
Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq")
-plot(fit)
plot(fit, show_residuals = TRUE)

+SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
+                   m1 = mkinsub("SFO", full = "Metabolite M1" ))
Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq")
+plot(fit)
plot(fit, show_residuals = TRUE)

 # Show the observed variables separately
-plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))

+plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))

 # Show the observed variables separately, with residuals
 plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomright"),
-     show_errmin = TRUE)

+     show_errmin = TRUE)

 # The same can be obtained with less typing, using the convenience function plot_sep
 plot_sep(fit, lpos = c("topright", "bottomright"))
-
+
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