From aa5aeeb5d55017774eff1066a495df59b97ca233 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 4 Nov 2019 23:55:09 +0100 Subject: Static documentation rebuilt by pkgdown --- docs/reference/plot.mkinfit.html | 27 ++++++++++++++++++--------- 1 file changed, 18 insertions(+), 9 deletions(-) (limited to 'docs/reference/plot.mkinfit.html') diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html index 04ef75e4..a3b912bb 100644 --- a/docs/reference/plot.mkinfit.html +++ b/docs/reference/plot.mkinfit.html @@ -71,7 +71,7 @@ observed data together with the solution of the fitted model." /> mkin - 0.9.49.6 + 0.9.49.8 @@ -150,9 +150,13 @@ observed data together with the solution of the fitted model.

lpos = "topright", inset = c(0.05, 0.05), show_errmin = FALSE, errmin_digits = 3, frame = TRUE, ...) -plot_sep(fit, show_errmin = TRUE, ...) +plot_sep(fit, show_errmin = TRUE, + show_residuals = ifelse(identical(fit$err_mod, "const"), TRUE, + "standardized"), ...) -plot_res(fit, sep_obs = FALSE, show_errmin = sep_obs, ...) +plot_res(fit, sep_obs = FALSE, show_errmin = sep_obs, + show_residuals = ifelse(identical(fit$err_mod, "const"), TRUE, + "standardized"), ...) plot_err(fit, sep_obs = FALSE, show_errmin = sep_obs, ...) @@ -216,7 +220,9 @@ corresponding model prediction lines.

Should residuals be shown? If only one plot of the fits is shown, the residual plot is in the lower third of the plot. Otherwise, i.e. if "sep_obs" is given, the residual plots will be located -to the right of the plots of the fitted curves.

+to the right of the plots of the fitted curves. If this is set to +'standardized', a plot of the residuals divided by the standard deviation + given by the fitted error model will be shown.

show_errplot @@ -274,6 +280,10 @@ chi2 error percentage.

...

Further arguments passed to plot.

+ + standardized +

For

+

Value

@@ -291,16 +301,15 @@ latex is being used for the formatting of the chi2 error level, if # parent to sink included # \dontrun{ SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"), - m1 = mkinsub("SFO", full = "Metabolite M1" ))
#> Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, error_model = "tc")
#> Warning: Observations with value of zero were removed from the data
plot(fit)
plot_res(fit)
plot_err(fit)
+ m1 = mkinsub("SFO", full = "Metabolite M1" ))
#> Successfully compiled differential equation model from auto-generated C code.
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, error_model = "tc")
#> Warning: Observations with value of zero were removed from the data
plot(fit)
plot_res(fit)
plot_res(fit, standardized = FALSE)
#> Warning: "standardized" ist kein Grafikparameter
#> Warning: "standardized" ist kein Grafikparameter
#> Warning: "standardized" ist kein Grafikparameter
#> Warning: "standardized" ist kein Grafikparameter
#> Warning: "standardized" ist kein Grafikparameter
#> Warning: "standardized" ist kein Grafikparameter
plot_err(fit)
# Show the observed variables separately, with residuals plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomright"), - show_errmin = TRUE)
+ show_errmin = TRUE)
# The same can be obtained with less typing, using the convenience function plot_sep -plot_sep(fit, lpos = c("topright", "bottomright")) - +plot_sep(fit, lpos = c("topright", "bottomright"))
# Show the observed variables separately, with the error model plot(fit, sep_obs = TRUE, show_errplot = TRUE, lpos = c("topright", "bottomright"), - show_errmin = TRUE)
# } + show_errmin = TRUE)
# }
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