From 2bb59c88d49b193f278916ad9cc4de83c0de9604 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 2 Mar 2022 18:03:54 +0100 Subject: Make tests more platform independent, update docs --- docs/reference/plot.mmkin.html | 328 ++++++++++++++++------------------------- 1 file changed, 123 insertions(+), 205 deletions(-) (limited to 'docs/reference/plot.mmkin.html') diff --git a/docs/reference/plot.mmkin.html b/docs/reference/plot.mmkin.html index 3348e050..0994c4b6 100644 --- a/docs/reference/plot.mmkin.html +++ b/docs/reference/plot.mmkin.html @@ -1,71 +1,16 @@ - - - - - - - -Plot model fits (observed and fitted) and the residuals for a row or column -of an mmkin object — plot.mmkin • mkin - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Plot model fits (observed and fitted) and the residuals for a row or column +of an mmkin object — plot.mmkin • mkin - - - - - - - - - - + + - - - -
-
- -
- -
+
-

When x is a row selected from an mmkin object ([.mmkin), the +

When x is a row selected from an mmkin object ([.mmkin), the same model fitted for at least one dataset is shown. When it is a column, the fit of at least one model to the same dataset is shown.

-
# S3 method for mmkin
-plot(
-  x,
-  main = "auto",
-  legends = 1,
-  resplot = c("time", "errmod"),
-  ylab = "Residue",
-  standardized = FALSE,
-  show_errmin = TRUE,
-  errmin_var = "All data",
-  errmin_digits = 3,
-  cex = 0.7,
-  rel.height.middle = 0.9,
-  ymax = "auto",
-  ...
-)
- -

Arguments

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
x

An object of class mmkin, with either one row or one -column.

main

The main title placed on the outer margin of the plot.

legends

An index for the fits for which legends should be shown.

resplot

Should the residuals plotted against time, using -mkinresplot, or as squared residuals against predicted -values, with the error model, using mkinerrplot.

ylab

Label for the y axis.

standardized

Should the residuals be standardized? This option -is passed to mkinresplot, it only takes effect if -resplot = "time".

show_errmin

Should the chi2 error level be shown on top of the plots -to the left?

errmin_var

The variable for which the FOCUS chi2 error value should -be shown.

errmin_digits

The number of significant digits for rounding the FOCUS -chi2 error percentage.

cex

Passed to the plot functions and mtext.

rel.height.middle

The relative height of the middle plot, if more -than two rows of plots are shown.

ymax

Maximum y axis value for plot.mkinfit.

...

Further arguments passed to plot.mkinfit and -mkinresplot.

- -

Value

+
+
# S3 method for mmkin
+plot(
+  x,
+  main = "auto",
+  legends = 1,
+  resplot = c("time", "errmod"),
+  ylab = "Residue",
+  standardized = FALSE,
+  show_errmin = TRUE,
+  errmin_var = "All data",
+  errmin_digits = 3,
+  cex = 0.7,
+  rel.height.middle = 0.9,
+  ymax = "auto",
+  ...
+)
+
+
+

Arguments

+
x
+

An object of class mmkin, with either one row or one +column.

+
main
+

The main title placed on the outer margin of the plot.

+
legends
+

An index for the fits for which legends should be shown.

+
resplot
+

Should the residuals plotted against time, using +mkinresplot, or as squared residuals against predicted +values, with the error model, using mkinerrplot.

+
ylab
+

Label for the y axis.

+
standardized
+

Should the residuals be standardized? This option +is passed to mkinresplot, it only takes effect if +resplot = "time".

+
show_errmin
+

Should the chi2 error level be shown on top of the plots +to the left?

+
errmin_var
+

The variable for which the FOCUS chi2 error value should +be shown.

+
errmin_digits
+

The number of significant digits for rounding the FOCUS +chi2 error percentage.

+
cex
+

Passed to the plot functions and mtext.

+
rel.height.middle
+

The relative height of the middle plot, if more +than two rows of plots are shown.

+
ymax
+

Maximum y axis value for plot.mkinfit.

+
...
+

Further arguments passed to plot.mkinfit and +mkinresplot.

+
+
+

Value

The function is called for its side effect.

-

Details

- -

If the current plot device is a tikz device, then +

+
+

Details

+

If the current plot device is a tikz device, then latex is being used for the formatting of the chi2 error level.

-

Author

- +
+
+

Author

Johannes Ranke

+
-

Examples

-
- # \dontrun{ - # Only use one core not to offend CRAN checks - fits <- mmkin(c("FOMC", "HS"), - list("FOCUS B" = FOCUS_2006_B, "FOCUS C" = FOCUS_2006_C), # named list for titles - cores = 1, quiet = TRUE, error_model = "tc") -
#> Warning: Optimisation did not converge: -#> iteration limit reached without convergence (10)
plot(fits[, "FOCUS C"]) -
plot(fits["FOMC", ]) -
plot(fits["FOMC", ], show_errmin = FALSE) -
- # We can also plot a single fit, if we like the way plot.mmkin works, but then the plot - # height should be smaller than the plot width (this is not possible for the html pages - # generated by pkgdown, as far as I know). - plot(fits["FOMC", "FOCUS C"]) # same as plot(fits[1, 2]) -
- # Show the error models - plot(fits["FOMC", ], resplot = "errmod") -
# } - -
+
+

Examples

+

+  # \dontrun{
+  # Only use one core not to offend CRAN checks
+  fits <- mmkin(c("FOMC", "HS"),
+                list("FOCUS B" = FOCUS_2006_B, "FOCUS C" = FOCUS_2006_C), # named list for titles
+                cores = 1, quiet = TRUE, error_model = "tc")
+  plot(fits[, "FOCUS C"])
+
+  plot(fits["FOMC", ])
+
+  plot(fits["FOMC", ], show_errmin = FALSE)
+
+
+  # We can also plot a single fit, if we like the way plot.mmkin works, but then the plot
+  # height should be smaller than the plot width (this is not possible for the html pages
+  # generated by pkgdown, as far as I know).
+  plot(fits["FOMC", "FOCUS C"]) # same as plot(fits[1, 2])
+
+
+  # Show the error models
+  plot(fits["FOMC", ], resplot = "errmod")
+
+  # }
+
+
+
+
-
- - + + -- cgit v1.2.1