From 91c5db736a4d3f2290a0cc5698fb4e35ae7bda59 Mon Sep 17 00:00:00 2001
From: Johannes Ranke
Date: Wed, 18 May 2022 21:26:17 +0200
Subject: Remove outdated comment in FOCUS L vignette, update docs
This also adds the first benchmark results obtained on my laptop system
---
docs/reference/saem.html | 24 ++++++++++++------------
1 file changed, 12 insertions(+), 12 deletions(-)
(limited to 'docs/reference/saem.html')
diff --git a/docs/reference/saem.html b/docs/reference/saem.html
index cc597665..7e22e839 100644
--- a/docs/reference/saem.html
+++ b/docs/reference/saem.html
@@ -291,21 +291,21 @@ using mmkin.
#> log_k1 -2.5841 -3.6876 -1.4805
#> log_k2 -3.5228 -5.3254 -1.7203
#> g_qlogis -0.1027 -0.8719 0.6665
-#> a.1 1.8856 1.6676 2.1037
-#> SD.parent_0 2.7682 0.7668 4.7695
+#> a.1 1.8856 1.6770 2.0943
+#> SD.parent_0 2.7682 0.7669 4.7695
#> SD.log_k_A1 1.7447 0.4047 3.0848
#> SD.f_parent_qlogis 0.4525 0.1620 0.7431
#> SD.log_k1 1.2423 0.4560 2.0285
#> SD.log_k2 2.0390 0.7601 3.3180
-#> SD.g_qlogis 0.4439 -0.3069 1.1947
+#> SD.g_qlogis 0.4439 -0.3068 1.1946
plot(f_saem_dfop_sfo)
summary(f_saem_dfop_sfo, data = TRUE)
#> saemix version used for fitting: 3.0
#> mkin version used for pre-fitting: 1.1.0
-#> R version used for fitting: 4.1.2
-#> Date of fit: Mon Mar 7 13:15:26 2022
-#> Date of summary: Mon Mar 7 13:15:26 2022
+#> R version used for fitting: 4.2.0
+#> Date of fit: Wed May 18 20:41:57 2022
+#> Date of summary: Wed May 18 20:41:57 2022
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -320,7 +320,7 @@ using mmkin.
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 8.741 s
+#> Fitted in 9.745 s
#> Using 300, 100 iterations and 10 chains
#>
#> Variance model: Constant variance
@@ -359,16 +359,16 @@ using mmkin.
#>
#> Random effects:
#> est. lower upper
-#> SD.parent_0 2.7682 0.7668 4.7695
+#> SD.parent_0 2.7682 0.7669 4.7695
#> SD.log_k_A1 1.7447 0.4047 3.0848
#> SD.f_parent_qlogis 0.4525 0.1620 0.7431
#> SD.log_k1 1.2423 0.4560 2.0285
#> SD.log_k2 2.0390 0.7601 3.3180
-#> SD.g_qlogis 0.4439 -0.3069 1.1947
+#> SD.g_qlogis 0.4439 -0.3068 1.1946
#>
#> Variance model:
#> est. lower upper
-#> a.1 1.886 1.668 2.104
+#> a.1 1.886 1.677 2.094
#>
#> Backtransformed parameters:
#> est. lower upper
@@ -554,7 +554,7 @@ using mmkin.
#> Dataset 10 A1 21 6.4 7.59693 -1.19693 1.886 -0.634761
#> Dataset 10 A1 21 7.2 7.59693 -0.39693 1.886 -0.210502
#> Dataset 10 A1 41 9.1 9.86436 -0.76436 1.886 -0.405361
-#> Dataset 10 A1 41 8.5 9.86436 -1.36436 1.886 -0.723555
+#> Dataset 10 A1 41 8.5 9.86436 -1.36436 1.886 -0.723556
#> Dataset 10 A1 63 11.7 10.99397 0.70603 1.886 0.374425
#> Dataset 10 A1 63 12.0 10.99397 1.00603 1.886 0.533522
#> Dataset 10 A1 91 13.3 11.91274 1.38726 1.886 0.735696
@@ -589,7 +589,7 @@ using mmkin.
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