From b7901aac76df753ec1213cb02bebea055965ee87 Mon Sep 17 00:00:00 2001
From: Ranke Johannes <johannes.ranke@agroscope.admin.ch>
Date: Mon, 30 Oct 2023 17:09:21 +0100
Subject: Update static docs

---
 docs/reference/saem.html | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)

(limited to 'docs/reference/saem.html')

diff --git a/docs/reference/saem.html b/docs/reference/saem.html
index 9c367984..527718ef 100644
--- a/docs/reference/saem.html
+++ b/docs/reference/saem.html
@@ -19,7 +19,7 @@ Expectation Maximisation algorithm (SAEM)."><!-- mathjax --><script src="https:/
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.6</span>
       </span>
     </div>
 
@@ -55,6 +55,9 @@ Expectation Maximisation algorithm (SAEM)."><!-- mathjax --><script src="https:/
     <li>
       <a href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
     </li>
+    <li>
+      <a href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a>
+    </li>
     <li>
       <a href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
     </li>
@@ -365,6 +368,8 @@ using <a href="mmkin.html">mmkin</a>.</p>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></span>
 <span class="r-plt img"><img src="saem-1.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"individual.fit"</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Simulating data using nsim = 1000 simulated datasets</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Computing WRES and npde .</span>
 <span class="r-plt img"><img src="saem-2.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_saem_fomc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"npde"</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Simulating data using nsim = 1000 simulated datasets</span>
@@ -439,10 +444,10 @@ using <a href="mmkin.html">mmkin</a>.</p>
 <span class="r-plt img"><img src="saem-4.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> saemix version used for fitting:      3.2 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting:  1.2.4 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting:         4.3.0 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit:     Fri May 19 09:17:55 2023 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Fri May 19 09:17:55 2023 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting:  1.2.6 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting:         4.3.1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit:     Mon Oct 30 09:34:35 2023 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Mon Oct 30 09:34:35 2023 </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Equations:</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span>
@@ -457,7 +462,7 @@ using <a href="mmkin.html">mmkin</a>.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Model predictions using solution type analytical </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 4.02 s</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 8.745 s</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Using 300, 100 iterations and 10 chains</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Variance model: Constant variance </span>
-- 
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