From 3eefecf0adfbb30b8fb895c244dea6903bcb3e9c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 31 Jan 2019 16:55:20 +0100 Subject: Restore NAMESPACE which was accidentally overwritten by pkgdown -> roxygen --- docs/reference/schaefer07_complex_case.html | 20 ++++++++++++++++++-- 1 file changed, 18 insertions(+), 2 deletions(-) (limited to 'docs/reference/schaefer07_complex_case.html') diff --git a/docs/reference/schaefer07_complex_case.html b/docs/reference/schaefer07_complex_case.html index 0e20e895..d1c89770 100644 --- a/docs/reference/schaefer07_complex_case.html +++ b/docs/reference/schaefer07_complex_case.html @@ -155,12 +155,28 @@

Examples

- 
data <- mkin_wide_to_long(schaefer07_complex_case, time = "time")
#> Error in mkin_wide_to_long(schaefer07_complex_case, time = "time"): konnte Funktion "mkin_wide_to_long" nicht finden
model <- mkinmod(
+    
data <- mkin_wide_to_long(schaefer07_complex_case, time = "time")
+model <- mkinmod(
   parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE),
   A1 = list(type = "SFO", to = "A2"),
   B1 = list(type = "SFO"),
   C1 = list(type = "SFO"),
-  A2 = list(type = "SFO"), use_of_ff = "max")
#> Error in mkinmod(parent = list(type = "SFO", to = c("A1", "B1", "C1"),     sink = FALSE), A1 = list(type = "SFO", to = "A2"), B1 = list(type = "SFO"),     C1 = list(type = "SFO"), A2 = list(type = "SFO"), use_of_ff = "max"): konnte Funktion "mkinmod" nicht finden
  
    fit <- mkinfit(model, data, quiet = TRUE)
#> Error in mkinfit(model, data, quiet = TRUE): konnte Funktion "mkinfit" nicht finden
    plot(fit)
#> Error in plot(fit): Objekt 'fit' nicht gefunden
    endpoints(fit)
#> Error in endpoints(fit): konnte Funktion "endpoints" nicht finden
  
 # Compare with the results obtained in the original publication
+  A2 = list(type = "SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
  
    fit <- mkinfit(model, data, quiet = TRUE)
+    plot(fit)
    endpoints(fit)
#> $ff
+#>   parent_A1   parent_B1   parent_C1 parent_sink       A1_A2     A1_sink 
+#>   0.3809621   0.1954665   0.4235714   0.0000000   0.4479674   0.5520326 
+#> 
+#> $SFORB
+#> logical(0)
+#> 
+#> $distimes
+#>            DT50      DT90
+#> parent 13.95078  46.34350
+#> A1     49.75342 165.27728
+#> B1     37.26913 123.80536
+#> C1     11.23133  37.30968
+#> A2     28.50591  94.69457
+#> 
  
 # Compare with the results obtained in the original publication
  print(schaefer07_complex_results)
#>         compound          parameter  KinGUI ModelMaker deviation
 #> 1         parent   degradation rate  0.0496     0.0506       2.0
 #> 2         parent               DT50 13.9900    13.6900       2.2
-- 
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