From 6211f3ef4995657798686d8d4ab43ed9406e8a08 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 12 May 2020 16:34:00 +0200 Subject: Update vignettes and docs --- docs/reference/schaefer07_complex_case.html | 63 +++++++++++++++-------------- 1 file changed, 32 insertions(+), 31 deletions(-) (limited to 'docs/reference/schaefer07_complex_case.html') diff --git a/docs/reference/schaefer07_complex_case.html b/docs/reference/schaefer07_complex_case.html index 27b19430..dcecc9b5 100644 --- a/docs/reference/schaefer07_complex_case.html +++ b/docs/reference/schaefer07_complex_case.html @@ -10,23 +10,27 @@ - + - + - + + + + + - - + + - + - - + + @@ -39,7 +43,6 @@ - @@ -57,7 +60,7 @@ - +
@@ -115,7 +118,12 @@
@@ -145,7 +153,7 @@

Format

-

The data set is a data frame with 8 observations on the following 6 variables.

+

The data set is a data frame with 8 observations on the following 6 variables.

time

a numeric vector

parent

a numeric vector

A1

a numeric vector

@@ -170,20 +178,17 @@ C1 = list(type = "SFO"), A2 = list(type = "SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
# \dontrun{ fit <- mkinfit(model, data, quiet = TRUE) - plot(fit)
endpoints(fit)
#> $ff + plot(fit)
endpoints(fit)
#> $ff #> parent_A1 parent_B1 parent_C1 parent_sink A1_A2 A1_sink -#> 0.3809619 0.1954667 0.4235714 0.0000000 0.4479620 0.5520380 -#> -#> $SFORB -#> logical(0) +#> 0.3809618 0.1954667 0.4235715 0.0000000 0.4479625 0.5520375 #> #> $distimes #> DT50 DT90 #> parent 13.95078 46.34350 -#> A1 49.75344 165.27737 -#> B1 37.26907 123.80517 -#> C1 11.23131 37.30960 -#> A2 28.50627 94.69577 +#> A1 49.75346 165.27741 +#> B1 37.26904 123.80508 +#> C1 11.23130 37.30958 +#> A2 28.50628 94.69580 #>
# } # Compare with the results obtained in the original publication print(schaefer07_complex_results)
#> compound parameter KinGUI ModelMaker deviation @@ -202,14 +207,10 @@ #> 13 metabolite A2 degradation rate 0.0245 0.0244 0.4 #> 14 metabolite A2 DT50 28.2400 28.4500 0.7
- @@ -220,7 +221,7 @@
-

Site built with pkgdown 1.4.1.

+

Site built with pkgdown 1.5.1.

-- cgit v1.2.1