From e05656d57668688b971c28e32b4cfd4d3eac4662 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 13:03:50 +0200 Subject: Correct and rebuild docs - Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown --- docs/reference/schaefer07_complex_case.html | 37 +++++++++++++++++++---------- 1 file changed, 24 insertions(+), 13 deletions(-) (limited to 'docs/reference/schaefer07_complex_case.html') diff --git a/docs/reference/schaefer07_complex_case.html b/docs/reference/schaefer07_complex_case.html index a9c64362..c6635409 100644 --- a/docs/reference/schaefer07_complex_case.html +++ b/docs/reference/schaefer07_complex_case.html @@ -16,13 +16,15 @@ - + + - - + + + @@ -49,6 +51,7 @@ + @@ -118,6 +121,7 @@ +
@@ -147,7 +151,8 @@
B1

a numeric vector

C1

a numeric vector

A2

a numeric vector

-

The results are a data frame with 14 results for different parameter values

+ +

The results are a data frame with 14 results for different parameter values

References

@@ -160,12 +165,13 @@

Examples

data <- mkin_wide_to_long(schaefer07_complex_case, time = "time")
 model <- mkinmod(
-  parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE),
-  A1 = list(type = "SFO", to = "A2"),
-  B1 = list(type = "SFO"),
-  C1 = list(type = "SFO"),
-  A2 = list(type = "SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
  
    fit <- mkinfit(model, data, quiet = TRUE)
-    plot(fit)
    endpoints(fit)
#> $ff
+  parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE),
+  A1 = list(type = "SFO", to = "A2"),
+  B1 = list(type = "SFO"),
+  C1 = list(type = "SFO"),
+  A2 = list(type = "SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
  # \dontrun{
+    fit <- mkinfit(model, data, quiet = TRUE)
+    plot(fit)
    endpoints(fit)
#> $ff
 #>   parent_A1   parent_B1   parent_C1 parent_sink       A1_A2     A1_sink 
 #>   0.3809619   0.1954667   0.4235714   0.0000000   0.4479620   0.5520380 
 #> 
@@ -179,8 +185,9 @@
 #> B1     37.26907 123.80517
 #> C1     11.23131  37.30960
 #> A2     28.50627  94.69577
-#> 
  
 # Compare with the results obtained in the original publication
- print(schaefer07_complex_results)
#>         compound          parameter  KinGUI ModelMaker deviation
+#> 
  # }
+ # Compare with the results obtained in the original publication
+ print(schaefer07_complex_results)
#>         compound          parameter  KinGUI ModelMaker deviation
 #> 1         parent   degradation rate  0.0496     0.0506       2.0
 #> 2         parent               DT50 13.9900    13.6900       2.2
 #> 3  metabolite A1 formation fraction  0.3803     0.3696       2.9
@@ -210,19 +217,23 @@
+ + + -- cgit v1.2.1