From 3eefecf0adfbb30b8fb895c244dea6903bcb3e9c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 31 Jan 2019 16:55:20 +0100 Subject: Restore NAMESPACE which was accidentally overwritten by pkgdown -> roxygen --- docs/reference/summary.mkinfit.html | 71 ++++++++++++++++++++++++++++++++++++- 1 file changed, 70 insertions(+), 1 deletion(-) (limited to 'docs/reference/summary.mkinfit.html') diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index b6f6a5c7..2815eccb 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -206,7 +206,76 @@

Examples

- 
  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> Error in mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE): konnte Funktion "mkinfit" nicht finden
+ 
  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> mkin version used for fitting:    0.9.47.6 
+#> R version used for fitting:       3.5.2 
+#> Date of fit:     Thu Jan 31 16:52:23 2019 
+#> Date of summary: Thu Jan 31 16:52:23 2019 
+#> 
+#> Equations:
+#> d_parent/dt = - k_parent_sink * parent
+#> 
+#> Model predictions using solution type analytical 
+#> 
+#> Fitted with method Port using 35 model solutions performed in 0.085 s
+#> 
+#> Weighting: none
+#> 
+#> Starting values for parameters to be optimised:
+#>                value   type
+#> parent_0      101.24  state
+#> k_parent_sink   0.10 deparm
+#> 
+#> Starting values for the transformed parameters actually optimised:
+#>                        value lower upper
+#> parent_0          101.240000  -Inf   Inf
+#> log_k_parent_sink  -2.302585  -Inf   Inf
+#> 
+#> Fixed parameter values:
+#> None
+#> 
+#> Optimised, transformed parameters with symmetric confidence intervals:
+#>                   Estimate Std. Error  Lower   Upper
+#> parent_0           109.200     4.3910 98.410 119.900
+#> log_k_parent_sink   -3.291     0.1152 -3.573  -3.009
+#> 
+#> Parameter correlation:
+#>                   parent_0 log_k_parent_sink
+#> parent_0             1.000             0.575
+#> log_k_parent_sink    0.575             1.000
+#> 
+#> Residual standard error: 6.08 on 6 degrees of freedom
+#> 
+#> Backtransformed parameters:
+#> Confidence intervals for internally transformed parameters are asymmetric.
+#> t-test (unrealistically) based on the assumption of normal distribution
+#> for estimators of untransformed parameters.
+#>                Estimate t value    Pr(>t)    Lower     Upper
+#> parent_0      109.20000  24.860 1.394e-07 98.41000 119.90000
+#> k_parent_sink   0.03722   8.679 6.457e-05  0.02807   0.04934
+#> 
+#> Chi2 error levels in percent:
+#>          err.min n.optim df
+#> All data   8.385       2  6
+#> parent     8.385       2  6
+#> 
+#> Resulting formation fractions:
+#>             ff
+#> parent_sink  1
+#> 
+#> Estimated disappearance times:
+#>         DT50  DT90
+#> parent 18.62 61.87
+#> 
+#> Data:
+#>  time variable observed predicted residual
+#>     0   parent   101.24   109.153  -7.9132
+#>     3   parent    99.27    97.622   1.6484
+#>     7   parent    90.11    84.119   5.9913
+#>    14   parent    72.19    64.826   7.3641
+#>    30   parent    29.71    35.738  -6.0283
+#>    62   parent     5.98    10.862  -4.8818
+#>    90   parent     1.54     3.831  -2.2911
+#>   118   parent     0.39     1.351  -0.9613