From 8a3475c59f3d91ce5ce7d980d6de09360617e7fe Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 7 May 2019 08:12:27 +0200
Subject: After the OLS step, use OLS parameter estimates
- Fix the respective error in the code
- Static documentation rebuilt by pkgdown
---
docs/reference/summary.mkinfit.html | 30 +++++++++++++-----------------
1 file changed, 13 insertions(+), 17 deletions(-)
(limited to 'docs/reference/summary.mkinfit.html')
diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html
index 351d7a7e..a4f3d04f 100644
--- a/docs/reference/summary.mkinfit.html
+++ b/docs/reference/summary.mkinfit.html
@@ -209,17 +209,17 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>)), <span class='no'>FOCUS_2006_A</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> mkin version used for fitting: 0.9.49.4
+ <pre class="examples"><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>)), <span class='no'>FOCUS_2006_A</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='warning'>Warning: Could not calculate correlation; no covariance matrix</span></div><div class='output co'>#> mkin version used for fitting: 0.9.49.4
#> R version used for fitting: 3.6.0
-#> Date of fit: Fri May 3 19:08:31 2019
-#> Date of summary: Fri May 3 19:08:31 2019
+#> Date of fit: Tue May 7 08:09:03 2019
+#> Date of summary: Tue May 7 08:09:03 2019
#>
#> Equations:
#> d_parent/dt = - k_parent_sink * parent
#>
#> Model predictions using solution type analytical
#>
-#> Fitted using 131 model solutions performed in 0.27 s
+#> Fitted using 39 model solutions performed in 0.08 s
#>
#> Error model:
#> Constant variance
@@ -240,25 +240,21 @@
#> None
#>
#> Optimised, transformed parameters with symmetric confidence intervals:
-#> Estimate Std. Error Lower Upper
-#> parent_0 109.200 3.70400 99.630 118.700
-#> log_k_parent_sink -3.291 0.09176 -3.527 -3.055
-#> sigma 5.266 1.31600 1.882 8.649
+#> Estimate Std. Error Lower Upper
+#> parent_0 109.200 NA NA NA
+#> log_k_parent_sink -3.291 NA NA NA
+#> sigma 5.266 NA NA NA
#>
#> Parameter correlation:
-#> parent_0 log_k_parent_sink sigma
-#> parent_0 1.000e+00 5.428e-01 1.648e-07
-#> log_k_parent_sink 5.428e-01 1.000e+00 2.513e-07
-#> sigma 1.648e-07 2.513e-07 1.000e+00
-#>
+#> No covariance matrix
#> Backtransformed parameters:
#> Confidence intervals for internally transformed parameters are asymmetric.
#> t-test (unrealistically) based on the assumption of normal distribution
#> for estimators of untransformed parameters.
-#> Estimate t value Pr(>t) Lower Upper
-#> parent_0 109.20000 29.47 4.218e-07 99.6300 118.70000
-#> k_parent_sink 0.03722 10.90 5.650e-05 0.0294 0.04712
-#> sigma 5.26600 4.00 5.162e-03 1.8820 8.64900
+#> Estimate t value Pr(>t) Lower Upper
+#> parent_0 109.20000 NA NA NA NA
+#> k_parent_sink 0.03722 NA NA NA NA
+#> sigma 5.26600 NA NA NA NA
#>
#> FOCUS Chi2 error levels in percent:
#> err.min n.optim df
--
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