From c322a8102a399cbb1fe38c4c4ca4485cea8bc4e8 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 7 May 2019 08:43:12 +0200 Subject: Fix hessian calculations Static documentation rebuilt by pkgdown --- docs/reference/summary.mkinfit.html | 30 +++++++++++++++++------------- 1 file changed, 17 insertions(+), 13 deletions(-) (limited to 'docs/reference/summary.mkinfit.html') diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index a4f3d04f..9c4a21a9 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -209,17 +209,17 @@

Examples

- 
  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> Warning: Could not calculate correlation; no covariance matrix
#> mkin version used for fitting:    0.9.49.4 
+    
  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> mkin version used for fitting:    0.9.49.4 
 #> R version used for fitting:       3.6.0 
-#> Date of fit:     Tue May  7 08:09:03 2019 
-#> Date of summary: Tue May  7 08:09:03 2019 
+#> Date of fit:     Tue May  7 08:37:31 2019 
+#> Date of summary: Tue May  7 08:37:31 2019 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent
 #> 
 #> Model predictions using solution type analytical 
 #> 
-#> Fitted using 39 model solutions performed in 0.08 s
+#> Fitted using 131 model solutions performed in 0.277 s
 #> 
 #> Error model:
 #> Constant variance 
@@ -240,21 +240,25 @@
 #> None
 #> 
 #> Optimised, transformed parameters with symmetric confidence intervals:
-#>                   Estimate Std. Error Lower Upper
-#> parent_0           109.200         NA    NA    NA
-#> log_k_parent_sink   -3.291         NA    NA    NA
-#> sigma                5.266         NA    NA    NA
+#>                   Estimate Std. Error  Lower   Upper
+#> parent_0           109.200    3.70400 99.630 118.700
+#> log_k_parent_sink   -3.291    0.09176 -3.527  -3.055
+#> sigma                5.266    1.31600  1.882   8.649
 #> 
 #> Parameter correlation:
-#> No covariance matrix
+#>                    parent_0 log_k_parent_sink     sigma
+#> parent_0          1.000e+00         5.428e-01 1.648e-07
+#> log_k_parent_sink 5.428e-01         1.000e+00 2.513e-07
+#> sigma             1.648e-07         2.513e-07 1.000e+00
+#> 
 #> Backtransformed parameters:
 #> Confidence intervals for internally transformed parameters are asymmetric.
 #> t-test (unrealistically) based on the assumption of normal distribution
 #> for estimators of untransformed parameters.
-#>                Estimate t value Pr(>t) Lower Upper
-#> parent_0      109.20000      NA     NA    NA    NA
-#> k_parent_sink   0.03722      NA     NA    NA    NA
-#> sigma           5.26600      NA     NA    NA    NA
+#>                Estimate t value    Pr(>t)   Lower     Upper
+#> parent_0      109.20000   29.47 4.218e-07 99.6300 118.70000
+#> k_parent_sink   0.03722   10.90 5.650e-05  0.0294   0.04712
+#> sigma           5.26600    4.00 5.162e-03  1.8820   8.64900
 #> 
 #> FOCUS Chi2 error levels in percent:
 #>          err.min n.optim df
-- 
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