From ccc70e82af4ba435f0a71ba1ae4e0e92045c3852 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 5 May 2017 12:46:31 +0200 Subject: Static docs except articles rebuilt with current pkgdown --- docs/reference/summary.mkinfit.html | 104 ++++++++++++++++++++++-------------- 1 file changed, 65 insertions(+), 39 deletions(-) (limited to 'docs/reference/summary.mkinfit.html') diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index b305410d..dbed926d 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -25,12 +25,14 @@ - + + + @@ -70,7 +72,13 @@
  • Performance benefit by using compiled model definitions in mkin
    • +
  • + Calculation of time weighted average concentrations with mkin +
    • + +
  • + News
    • @@ -102,48 +110,66 @@ and residual values.

    - 
    # S3 method for mkinfit
+    
    # S3 method for mkinfit
 summary(object, data = TRUE, distimes = TRUE, alpha = 0.05, ...)
 # S3 method for summary.mkinfit
 print(x, digits = max(3, getOption("digits") - 3), ...)
    
     
     
     Arguments
    
-    
    
-      
    object
    
-      
    
-  an object of class mkinfit.
-
    
-      
    x
    
-      
    
-  an object of class summary.mkinfit.
-
    
-      
    data
    
-      
    
-  logical, indicating whether the data should be included in the summary. 
-
    
-      
    distimes
    
-      
    
-  logical, indicating whether DT50 and DT90 values should be included.
-
    
-      
    alpha
    
-      
    
-  error level for confidence interval estimation from t distribution
-
    
-      
    digits
    
-      
    
-  Number of digits to use for printing
-
    
-      
    …
    
-      
    
-  optional arguments passed to methods like print.
-
    
-    
    
+    
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
    object
    an object of class mkinfit.
    x
    an object of class summary.mkinfit.
    data
    logical, indicating whether the data should be included in the summary.
    distimes
    logical, indicating whether DT50 and DT90 values should be included.
    alpha
    error level for confidence interval estimation from t distribution
    digits
    Number of digits to use for printing
    …
    optional arguments passed to methods like print.
    
     
     
    Value
    
 
     
    The summary function returns a list derived from
   summary.modFit, with components, among others
    
-    
    The print method is called for its side effect, i.e. printing the summary.
    
+
    version, Rversion
    The mkin and R versions used
    
+  
    date.fit, date.summary
    The dates where the fit and the summary were produced
    
+  
    use_of_ff
    Was maximum or minimum use made of formation fractions
    
+  
    residuals, residualVariance, sigma, modVariance, df
    As in summary.modFit
    
+  
    cov.unscaled, cov.scaled, info, niter, stopmess, par
    As in summary.modFit
    
+  
    bpar
    Optimised and backtransformed parameters
    
+  
    diffs 
    The differential equations used in the model
    
+  
    data 
    The data (see Description above).
    
+  
    start 
    The starting values and bounds, if applicable, for optimised parameters.
    
+  
    fixed 
    The values of fixed parameters.
    
+  
    errmin 
    The chi2 error levels for each observed variable.
    
+  
    bparms.ode 
    All backtransformed ODE parameters, for use as starting parameters for
+    related models.
    
+  
    ff 
    The estimated formation fractions derived from the fitted model.
    
+  
    distimes 
    The DT50 and DT90 values for each observed variable.
    
+  
    SFORB
    If applicable, eigenvalues of SFORB components of the model.
    
+  The print method is called for its side effect, i.e. printing the summary.
+
     
     
    References
    
 
@@ -151,21 +177,21 @@
   Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
   Registration” Report of the FOCUS Work Group on Degradation Kinetics,
   EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
-  http://focus.jrc.ec.europa.eu/dk
    
+  http://esdac.jrc.europa.eu/projects/degradation-kinetics
    
     
 
     
    Examples
    
-    
      summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
    #> mkin version:    0.9.44.9000 
-#> R version:       3.3.2 
-#> Date of fit:     Thu Dec  8 07:57:55 2016 
-#> Date of summary: Thu Dec  8 07:57:55 2016 
+    
      summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
    #> mkin version:    0.9.45.2 
+#> R version:       3.4.0 
+#> Date of fit:     Fri May  5 12:46:20 2017 
+#> Date of summary: Fri May  5 12:46:20 2017 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent
 #> 
 #> Model predictions using solution type analytical 
 #> 
-#> Fitted with method Port using 35 model solutions performed in 0.079 s
+#> Fitted with method Port using 35 model solutions performed in 0.082 s
 #> 
 #> Weighting: none
 #> 
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