From b7901aac76df753ec1213cb02bebea055965ee87 Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Mon, 30 Oct 2023 17:09:21 +0100 Subject: Update static docs --- docs/reference/summary.saem.mmkin.html | 45 ++++++++++++++++++---------------- 1 file changed, 24 insertions(+), 21 deletions(-) (limited to 'docs/reference/summary.saem.mmkin.html') diff --git a/docs/reference/summary.saem.mmkin.html b/docs/reference/summary.saem.mmkin.html index d9049ce5..54e5260b 100644 --- a/docs/reference/summary.saem.mmkin.html +++ b/docs/reference/summary.saem.mmkin.html @@ -21,7 +21,7 @@ endpoints such as formation fractions and DT50 values. Optionally mkin - 1.2.4 + 1.2.6 @@ -57,6 +57,9 @@ endpoints such as formation fractions and DT50 values. Optionally
  • Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P
    • +
  • + Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione +
  • Testing hierarchical pathway kinetics with residue data on cyantraniliprole
    • @@ -330,10 +333,10 @@ saemix authors for the parts inherited from saemix.

    #> b.1 0.06401324 0.07920531 0.09439739 summary(f_saem_dfop_sfo_2, data = TRUE) #> saemix version used for fitting: 3.2 -#> mkin version used for pre-fitting: 1.2.4 -#> R version used for fitting: 4.3.0 -#> Date of fit: Fri May 19 09:20:09 2023 -#> Date of summary: Fri May 19 09:20:09 2023 +#> mkin version used for pre-fitting: 1.2.6 +#> R version used for fitting: 4.3.1 +#> Date of fit: Mon Oct 30 09:40:27 2023 +#> Date of summary: Mon Oct 30 09:40:27 2023 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -348,7 +351,7 @@ saemix authors for the parts inherited from saemix.

    #> #> Model predictions using solution type analytical #> -#> Fitted in 9.513 s +#> Fitted in 19.763 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Two-component variance function @@ -619,25 +622,25 @@ saemix authors for the parts inherited from saemix.

    #> #> Fixed effects: #> lower est. upper -#> parent_0 98.32277831 101.40841461 104.49405092 -#> k_m1 0.01510464 0.01667815 0.01841557 -#> f_parent_to_m1 0.20195605 0.27597108 0.36471512 -#> k1 0.07321367 0.10121120 0.13991523 -#> k2 0.01466928 0.01766483 0.02127208 -#> g 0.35098400 0.46314412 0.57916193 +#> parent_0 98.42519529 101.51623115 104.60726702 +#> k_m1 0.01505059 0.01662123 0.01835577 +#> f_parent_to_m1 0.20100222 0.27477835 0.36332008 +#> k1 0.07347479 0.10139028 0.13991179 +#> k2 0.01469861 0.01771120 0.02134125 +#> g 0.35506898 0.46263682 0.57379888 #> #> Random effects: #> lower est. upper -#> sd(f_parent_qlogis) 0.3832326 0.4435601 0.5038876 -#> sd(log_k1) 0.1181772 0.2996192 0.4810613 -#> sd(log_k2) -0.6281964 0.1898692 1.0079349 -#> sd(g_qlogis) 0.1885523 0.4250717 0.6615911 -#> corr(log_k2,g_qlogis) -0.8453380 -0.5695240 -0.2937099 +#> sd(f_parent_qlogis) 0.3827416 0.4435866 0.5044315 +#> sd(log_k1) 0.1226277 0.2981783 0.4737289 +#> sd(log_k2) -0.5457764 0.1912531 0.9282825 +#> sd(g_qlogis) 0.1483976 0.3997298 0.6510619 +#> corr(log_k2,g_qlogis) -0.8537145 -0.5845703 -0.3154261 #> #> -#> lower est. upper -#> a.1 0.67302582 0.87410123 1.07517663 -#> b.1 0.06403679 0.07925211 0.09446744 +#> lower est. upper +#> a.1 0.6732869 0.87421677 1.0751467 +#> b.1 0.0640392 0.07925135 0.0944635 # The correlation does not improve the fit judged by AIC and BIC, although # the likelihood is higher with the additional parameter anova(f_saem_dfop_sfo, f_saem_dfop_sfo_2, f_saem_dfop_sfo_3) @@ -645,7 +648,7 @@ saemix authors for the parts inherited from saemix.

    #> #> npar AIC BIC Lik #> f_saem_dfop_sfo_2 12 806.91 802.23 -391.46 -#> f_saem_dfop_sfo_3 13 807.91 802.83 -390.95 +#> f_saem_dfop_sfo_3 13 807.96 802.88 -390.98 #> f_saem_dfop_sfo 14 810.83 805.36 -391.41 # } -- cgit v1.2.1