From e5d1df9a9b1f0951d7dfbaf24eee4294470b73e2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 17 Nov 2022 14:54:20 +0100 Subject: Complete update of online docs for v1.2.0 --- docs/reference/summary.saem.mmkin.html | 494 +++++++++++++++++---------------- 1 file changed, 252 insertions(+), 242 deletions(-) (limited to 'docs/reference/summary.saem.mmkin.html') diff --git a/docs/reference/summary.saem.mmkin.html b/docs/reference/summary.saem.mmkin.html index 0ab239cb..dfa0b776 100644 --- a/docs/reference/summary.saem.mmkin.html +++ b/docs/reference/summary.saem.mmkin.html @@ -21,7 +21,7 @@ endpoints such as formation fractions and DT50 values. Optionally mkin - 1.1.2 + 1.2.0 @@ -48,11 +48,14 @@ endpoints such as formation fractions and DT50 values. Optionally Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models
  • - Example evaluation of FOCUS Example Dataset Z + Short demo of the multistart method
  • Performance benefit by using compiled model definitions in mkin
    • +
  • + Example evaluation of FOCUS Example Dataset Z +
  • Calculation of time weighted average concentrations with mkin
    • @@ -60,7 +63,10 @@ endpoints such as formation fractions and DT50 values. Optionally Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • @@ -96,7 +102,7 @@ endpoints such as formation fractions and DT50 values. Optionally 
    # S3 method for saem.mmkin
-summary(object, data = FALSE, verbose = FALSE, distimes = TRUE, ...)
+summary(object, data = FALSE, verbose = FALSE, distimes = TRUE, ...)
 
 # S3 method for summary.saem.mmkin
 print(x, digits = max(3, getOption("digits") - 3), verbose = x$verbose, ...)
    @@ -240,57 +246,56 @@ saemix authors for the parts inherited from saemix.

    #> #> Likelihood computed by importance sampling #> AIC BIC logLik -#> 828.1 822.7 -400.1 +#> 810.8 805.4 -391.4 #> #> Fitted parameters: -#> estimate lower upper -#> parent_0 100.74378 97.81291 103.67465 -#> log_k_m1 -4.06168 -4.17104 -3.95231 -#> f_parent_qlogis -0.92584 -1.31273 -0.53894 -#> log_k1 -2.81914 -3.60206 -2.03623 -#> log_k2 -3.63916 -4.32672 -2.95161 -#> g_qlogis -0.02927 -1.15247 1.09394 -#> a.1 0.86164 0.67928 1.04400 -#> b.1 0.07973 0.06437 0.09509 -#> SD.parent_0 0.73313 -7.46512 8.93137 -#> SD.log_k_m1 0.06488 -0.06041 0.19017 -#> SD.f_parent_qlogis 0.41955 0.15206 0.68705 -#> SD.log_k1 0.81750 0.29140 1.34361 -#> SD.log_k2 0.75265 0.27939 1.22590 -#> SD.g_qlogis 0.34411 -1.70964 2.39786 +#> estimate lower upper +#> parent_0 100.86947 97.81542 103.92353 +#> log_k_m1 -4.06947 -4.16944 -3.96950 +#> f_parent_qlogis -0.93256 -1.34200 -0.52312 +#> log_k1 -2.37017 -2.72660 -2.01375 +#> log_k2 -4.06264 -4.21344 -3.91184 +#> g_qlogis -0.02174 -0.45898 0.41549 +#> a.1 0.87598 0.67275 1.07922 +#> b.1 0.07949 0.06389 0.09509 +#> SD.parent_0 0.19170 -30.36286 30.74626 +#> SD.log_k_m1 0.01883 -0.28736 0.32502 +#> SD.f_parent_qlogis 0.44300 0.16391 0.72209 +#> SD.log_k1 0.35320 0.09661 0.60978 +#> SD.log_k2 0.13707 0.02359 0.25056 +#> SD.g_qlogis 0.37478 0.04490 0.70467 illparms(f_saem_dfop_sfo) -#> [1] "sd(parent_0)" "sd(log_k_m1)" "sd(g_qlogis)" +#> [1] "sd(parent_0)" "sd(log_k_m1)" f_saem_dfop_sfo_2 <- update(f_saem_dfop_sfo, covariance.model = diag(c(0, 0, 1, 1, 1, 0))) illparms(f_saem_dfop_sfo_2) -#> character(0) intervals(f_saem_dfop_sfo_2) #> Approximate 95% confidence intervals #> #> Fixed effects: #> lower est. upper -#> parent_0 97.54844979 100.46239264 103.37633550 -#> k_m1 0.01575805 0.01729111 0.01897331 -#> f_parent_to_m1 0.21014925 0.28626877 0.37680664 -#> k1 0.02651112 0.05601399 0.11834908 -#> k2 0.01326524 0.02649799 0.05293107 -#> g 0.31467778 0.51297098 0.70726363 +#> parent_0 97.57609542 100.73343868 103.89078195 +#> k_m1 0.01549292 0.01714893 0.01898194 +#> f_parent_to_m1 0.20720315 0.28358738 0.37481744 +#> k1 0.06149334 0.08733164 0.12402670 +#> k2 0.01448390 0.01699942 0.01995184 +#> g 0.45084762 0.51075839 0.57036168 #> #> Random effects: -#> lower est. upper -#> sd(f_parent_qlogis) 0.1658367 0.4471180 0.7283993 -#> sd(log_k1) 0.2768757 0.7929203 1.3089649 -#> sd(log_k2) 0.2693629 0.7566116 1.2438602 +#> lower est. upper +#> sd(f_parent_qlogis) 0.16606767 0.4479731 0.7298784 +#> sd(log_k1) 0.12284609 0.3588446 0.5948430 +#> sd(log_k2) 0.05379723 0.1548780 0.2559588 #> #> -#> lower est. upper -#> a.1 0.70273100 0.88750764 1.07228428 -#> b.1 0.06781347 0.08328016 0.09874685 -summary(f_saem_dfop_sfo_2, data = TRUE) -#> saemix version used for fitting: 3.1 -#> mkin version used for pre-fitting: 1.1.2 -#> R version used for fitting: 4.2.1 -#> Date of fit: Wed Aug 10 14:31:01 2022 -#> Date of summary: Wed Aug 10 14:31:01 2022 +#> lower est. upper +#> a.1 0.6811490 0.88503409 1.08891921 +#> b.1 0.0676515 0.08336272 0.09907394 +summary(f_saem_dfop_sfo_2, data = TRUE) +#> saemix version used for fitting: 3.2 +#> mkin version used for pre-fitting: 1.2.0 +#> R version used for fitting: 4.2.2 +#> Date of fit: Thu Nov 17 14:04:08 2022 +#> Date of summary: Thu Nov 17 14:04:08 2022 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -305,7 +310,7 @@ saemix authors for the parts inherited from saemix.

    #> #> Model predictions using solution type analytical #> -#> Fitted in 26.786 s +#> Fitted in 26.014 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Two-component variance function @@ -323,228 +328,233 @@ saemix authors for the parts inherited from saemix.

    #> #> Likelihood computed by importance sampling #> AIC BIC logLik -#> 825.6 821.3 -401.8 +#> 809.5 805.2 -393.7 #> #> Optimised parameters: -#> est. lower upper -#> parent_0 100.4624 97.5484 103.3763 -#> log_k_m1 -4.0576 -4.1504 -3.9647 -#> f_parent_qlogis -0.9136 -1.3240 -0.5031 -#> log_k1 -2.8822 -3.6302 -2.1341 -#> log_k2 -3.6307 -4.3226 -2.9388 -#> g_qlogis 0.0519 -0.7783 0.8821 +#> est. lower upper +#> parent_0 100.73344 97.57610 103.89078 +#> log_k_m1 -4.06582 -4.16737 -3.96427 +#> f_parent_qlogis -0.92674 -1.34187 -0.51160 +#> log_k1 -2.43804 -2.78883 -2.08726 +#> log_k2 -4.07458 -4.23472 -3.91443 +#> g_qlogis 0.04304 -0.19725 0.28333 +#> a.1 0.88503 0.68115 1.08892 +#> b.1 0.08336 0.06765 0.09907 +#> SD.f_parent_qlogis 0.44797 0.16607 0.72988 +#> SD.log_k1 0.35884 0.12285 0.59484 +#> SD.log_k2 0.15488 0.05380 0.25596 #> #> Correlation: #> parnt_0 lg_k_m1 f_prnt_ log_k1 log_k2 -#> log_k_m1 -0.4102 -#> f_parent_qlogis -0.2113 0.2439 -#> log_k1 0.1308 -0.1305 -0.0504 -#> log_k2 -0.0383 0.0592 0.0151 0.0001 -#> g_qlogis -0.0029 -0.0118 0.0131 -0.2547 -0.1942 +#> log_k_m1 -0.4698 +#> f_parent_qlogis -0.2461 0.2709 +#> log_k1 0.1572 -0.1517 -0.0648 +#> log_k2 -0.0023 0.0835 0.0125 0.1420 +#> g_qlogis 0.2314 -0.2337 -0.0755 -0.2762 -0.4797 #> #> Random effects: #> est. lower upper -#> SD.f_parent_qlogis 0.4471 0.1658 0.7284 -#> SD.log_k1 0.7929 0.2769 1.3090 -#> SD.log_k2 0.7566 0.2694 1.2439 +#> SD.f_parent_qlogis 0.4480 0.1661 0.7299 +#> SD.log_k1 0.3588 0.1228 0.5948 +#> SD.log_k2 0.1549 0.0538 0.2560 #> #> Variance model: #> est. lower upper -#> a.1 0.88751 0.70273 1.07228 -#> b.1 0.08328 0.06781 0.09875 +#> a.1 0.88503 0.68115 1.08892 +#> b.1 0.08336 0.06765 0.09907 #> #> Backtransformed parameters: #> est. lower upper -#> parent_0 100.46239 97.54845 103.37634 -#> k_m1 0.01729 0.01576 0.01897 -#> f_parent_to_m1 0.28627 0.21015 0.37681 -#> k1 0.05601 0.02651 0.11835 -#> k2 0.02650 0.01327 0.05293 -#> g 0.51297 0.31468 0.70726 +#> parent_0 100.73344 97.57610 103.89078 +#> k_m1 0.01715 0.01549 0.01898 +#> f_parent_to_m1 0.28359 0.20720 0.37482 +#> k1 0.08733 0.06149 0.12403 +#> k2 0.01700 0.01448 0.01995 +#> g 0.51076 0.45085 0.57036 #> #> Resulting formation fractions: #> ff -#> parent_m1 0.2863 -#> parent_sink 0.7137 +#> parent_m1 0.2836 +#> parent_sink 0.7164 #> #> Estimated disappearance times: #> DT50 DT90 DT50back DT50_k1 DT50_k2 -#> parent 17.44 65.15 19.61 12.37 26.16 -#> m1 40.09 133.17 NA NA NA +#> parent 15.94 93.48 28.14 7.937 40.77 +#> m1 40.42 134.27 NA NA NA #> #> Data: -#> ds name time observed predicted residual std standardized -#> ds 1 parent 0 89.8 1.005e+02 -10.662393 8.4135 -1.267301 -#> ds 1 parent 0 104.1 1.005e+02 3.637607 8.4135 0.432355 -#> ds 1 parent 1 88.7 9.576e+01 -7.063498 8.0244 -0.880249 -#> ds 1 parent 1 95.5 9.576e+01 -0.263498 8.0244 -0.032837 -#> ds 1 parent 3 81.8 8.717e+01 -5.369491 7.3135 -0.734185 -#> ds 1 parent 3 94.5 8.717e+01 7.330509 7.3135 1.002320 -#> ds 1 parent 7 71.5 7.274e+01 -1.238672 6.1224 -0.202319 -#> ds 1 parent 7 70.3 7.274e+01 -2.438672 6.1224 -0.398322 -#> ds 1 parent 14 54.2 5.418e+01 0.022691 4.5984 0.004935 -#> ds 1 parent 14 49.6 5.418e+01 -4.577309 4.5984 -0.995423 -#> ds 1 parent 28 31.5 3.241e+01 -0.914545 2.8416 -0.321837 -#> ds 1 parent 28 28.8 3.241e+01 -3.614545 2.8416 -1.271993 -#> ds 1 parent 60 12.1 1.283e+01 -0.730904 1.3891 -0.526186 -#> ds 1 parent 60 13.6 1.283e+01 0.769096 1.3891 0.553681 -#> ds 1 parent 90 6.2 6.128e+00 0.071981 1.0238 0.070309 -#> ds 1 parent 90 8.3 6.128e+00 2.171981 1.0238 2.121538 -#> ds 1 parent 120 2.2 3.022e+00 -0.822164 0.9225 -0.891230 -#> ds 1 parent 120 2.4 3.022e+00 -0.622164 0.9225 -0.674429 -#> ds 1 m1 1 0.3 1.163e+00 -0.863423 0.8928 -0.967116 -#> ds 1 m1 1 0.2 1.163e+00 -0.963423 0.8928 -1.079126 -#> ds 1 m1 3 2.2 3.233e+00 -1.032930 0.9274 -1.113734 -#> ds 1 m1 3 3.0 3.233e+00 -0.232930 0.9274 -0.251152 -#> ds 1 m1 7 6.5 6.495e+00 0.005314 1.0393 0.005113 -#> ds 1 m1 7 5.0 6.495e+00 -1.494686 1.0393 -1.438116 -#> ds 1 m1 14 10.2 1.010e+01 0.096372 1.2230 0.078801 -#> ds 1 m1 14 9.5 1.010e+01 -0.603628 1.2230 -0.493572 -#> ds 1 m1 28 12.2 1.269e+01 -0.492073 1.3802 -0.356526 -#> ds 1 m1 28 13.4 1.269e+01 0.707927 1.3802 0.512922 -#> ds 1 m1 60 11.8 1.086e+01 0.944360 1.2669 0.745420 -#> ds 1 m1 60 13.2 1.086e+01 2.344360 1.2669 1.850494 -#> ds 1 m1 90 6.6 7.723e+00 -1.123088 1.0961 -1.024658 -#> ds 1 m1 90 9.3 7.723e+00 1.576912 1.0961 1.438708 -#> ds 1 m1 120 3.5 5.184e+00 -1.683936 0.9869 -1.706219 -#> ds 1 m1 120 5.4 5.184e+00 0.216064 0.9869 0.218923 -#> ds 2 parent 0 118.0 1.005e+02 17.537607 8.4135 2.084469 -#> ds 2 parent 0 99.8 1.005e+02 -0.662393 8.4135 -0.078730 -#> ds 2 parent 1 90.2 9.566e+01 -5.456414 8.0156 -0.680727 -#> ds 2 parent 1 94.6 9.566e+01 -1.056414 8.0156 -0.131795 -#> ds 2 parent 3 96.1 8.702e+01 9.082833 7.3009 1.244062 -#> ds 2 parent 3 78.4 8.702e+01 -8.617167 7.3009 -1.180281 -#> ds 2 parent 7 77.9 7.298e+01 4.919834 6.1423 0.800981 -#> ds 2 parent 7 77.7 7.298e+01 4.719834 6.1423 0.768420 -#> ds 2 parent 14 56.0 5.588e+01 0.124003 4.7372 0.026176 -#> ds 2 parent 14 54.7 5.588e+01 -1.175997 4.7372 -0.248245 -#> ds 2 parent 28 36.6 3.719e+01 -0.587869 3.2217 -0.182474 -#> ds 2 parent 28 36.8 3.719e+01 -0.387869 3.2217 -0.120394 -#> ds 2 parent 60 22.1 2.013e+01 1.973728 1.8966 1.040673 -#> ds 2 parent 60 24.7 2.013e+01 4.573728 1.8966 2.411556 -#> ds 2 parent 90 12.4 1.259e+01 -0.185933 1.3734 -0.135379 -#> ds 2 parent 90 10.8 1.259e+01 -1.785933 1.3734 -1.300347 -#> ds 2 parent 120 6.8 7.981e+00 -1.180542 1.1088 -1.064723 -#> ds 2 parent 120 7.9 7.981e+00 -0.080542 1.1088 -0.072640 -#> ds 2 m1 1 1.3 1.306e+00 -0.006246 0.8941 -0.006986 -#> ds 2 m1 3 3.7 3.589e+00 0.110879 0.9365 0.118399 -#> ds 2 m1 3 4.7 3.589e+00 1.110879 0.9365 1.186217 -#> ds 2 m1 7 8.1 7.062e+00 1.038045 1.0647 0.974978 -#> ds 2 m1 7 7.9 7.062e+00 0.838045 1.0647 0.787129 -#> ds 2 m1 14 10.1 1.065e+01 -0.553713 1.2549 -0.441227 -#> ds 2 m1 14 10.3 1.065e+01 -0.353713 1.2549 -0.281857 -#> ds 2 m1 28 10.7 1.284e+01 -2.144854 1.3900 -1.543111 -#> ds 2 m1 28 12.2 1.284e+01 -0.644854 1.3900 -0.463939 -#> ds 2 m1 60 10.7 1.082e+01 -0.115278 1.2645 -0.091165 -#> ds 2 m1 60 12.5 1.082e+01 1.684722 1.2645 1.332337 -#> ds 2 m1 90 9.1 8.014e+00 1.085607 1.1105 0.977610 -#> ds 2 m1 90 7.4 8.014e+00 -0.614393 1.1105 -0.553272 -#> ds 2 m1 120 6.1 5.736e+00 0.363593 1.0079 0.360737 -#> ds 2 m1 120 4.5 5.736e+00 -1.236407 1.0079 -1.226697 -#> ds 3 parent 0 106.2 1.005e+02 5.737607 8.4135 0.681955 -#> ds 3 parent 0 106.9 1.005e+02 6.437607 8.4135 0.765155 -#> ds 3 parent 1 107.4 9.343e+01 13.972212 7.8311 1.784188 -#> ds 3 parent 1 96.1 9.343e+01 2.672212 7.8311 0.341229 -#> ds 3 parent 3 79.4 8.160e+01 -2.196297 6.8531 -0.320484 -#> ds 3 parent 3 82.6 8.160e+01 1.003703 6.8531 0.146460 -#> ds 3 parent 7 63.9 6.464e+01 -0.737220 5.4557 -0.135129 -#> ds 3 parent 7 62.4 6.464e+01 -2.237220 5.4557 -0.410072 -#> ds 3 parent 14 51.0 4.772e+01 3.278433 4.0722 0.805086 -#> ds 3 parent 14 47.1 4.772e+01 -0.621567 4.0722 -0.152638 -#> ds 3 parent 28 36.1 3.303e+01 3.070676 2.8903 1.062400 -#> ds 3 parent 28 36.6 3.303e+01 3.570676 2.8903 1.235391 -#> ds 3 parent 60 20.1 1.929e+01 0.808039 1.8355 0.440235 -#> ds 3 parent 60 19.8 1.929e+01 0.508039 1.8355 0.276789 -#> ds 3 parent 90 11.3 1.209e+01 -0.794443 1.3425 -0.591785 -#> ds 3 parent 90 10.7 1.209e+01 -1.394443 1.3425 -1.038728 -#> ds 3 parent 120 8.2 7.590e+00 0.610002 1.0896 0.559843 -#> ds 3 parent 120 7.3 7.590e+00 -0.289998 1.0896 -0.266152 -#> ds 3 m1 0 0.8 -4.263e-14 0.800000 0.8875 0.901401 -#> ds 3 m1 1 1.8 1.692e+00 0.107665 0.8986 0.119811 -#> ds 3 m1 1 2.3 1.692e+00 0.607665 0.8986 0.676214 -#> ds 3 m1 3 4.2 4.455e+00 -0.255347 0.9619 -0.265449 -#> ds 3 m1 3 4.1 4.455e+00 -0.355347 0.9619 -0.369404 -#> ds 3 m1 7 6.8 8.124e+00 -1.324338 1.1160 -1.186685 -#> ds 3 m1 7 10.1 8.124e+00 1.975662 1.1160 1.770309 -#> ds 3 m1 14 11.4 1.104e+01 0.361860 1.2778 0.283196 -#> ds 3 m1 14 12.8 1.104e+01 1.761860 1.2778 1.378852 -#> ds 3 m1 28 11.5 1.177e+01 -0.272554 1.3225 -0.206097 -#> ds 3 m1 28 10.6 1.177e+01 -1.172554 1.3225 -0.886648 -#> ds 3 m1 60 7.5 9.242e+00 -1.741667 1.1747 -1.482591 -#> ds 3 m1 60 8.6 9.242e+00 -0.641667 1.1747 -0.546218 -#> ds 3 m1 90 7.3 6.837e+00 0.463318 1.0544 0.439398 -#> ds 3 m1 90 8.1 6.837e+00 1.263318 1.0544 1.198095 -#> ds 3 m1 120 5.3 4.906e+00 0.394322 0.9770 0.403595 -#> ds 3 m1 120 3.8 4.906e+00 -1.105678 0.9770 -1.131677 -#> ds 4 parent 0 104.7 1.005e+02 4.237607 8.4135 0.503670 -#> ds 4 parent 0 88.3 1.005e+02 -12.162393 8.4135 -1.445587 -#> ds 4 parent 1 94.2 9.723e+01 -3.029220 8.1458 -0.371877 -#> ds 4 parent 1 94.6 9.723e+01 -2.629220 8.1458 -0.322772 -#> ds 4 parent 3 78.1 9.114e+01 -13.041804 7.6420 -1.706592 -#> ds 4 parent 3 96.5 9.114e+01 5.358196 7.6420 0.701150 -#> ds 4 parent 7 76.2 8.033e+01 -4.133084 6.7488 -0.612421 -#> ds 4 parent 7 77.8 8.033e+01 -2.533084 6.7488 -0.375340 -#> ds 4 parent 14 70.8 6.504e+01 5.757987 5.4889 1.049017 -#> ds 4 parent 14 67.3 6.504e+01 2.257987 5.4889 0.411371 -#> ds 4 parent 28 43.1 4.418e+01 -1.080806 3.7849 -0.285557 -#> ds 4 parent 28 45.1 4.418e+01 0.919194 3.7849 0.242858 -#> ds 4 parent 60 21.3 2.110e+01 0.200596 1.9686 0.101899 -#> ds 4 parent 60 23.5 2.110e+01 2.400596 1.9686 1.219459 -#> ds 4 parent 90 11.8 1.183e+01 -0.034206 1.3263 -0.025791 -#> ds 4 parent 90 12.1 1.183e+01 0.265794 1.3263 0.200408 -#> ds 4 parent 120 7.0 6.985e+00 0.014647 1.0612 0.013803 -#> ds 4 parent 120 6.2 6.985e+00 -0.785353 1.0612 -0.740078 -#> ds 4 m1 0 1.6 -1.705e-13 1.600000 0.8875 1.802801 -#> ds 4 m1 1 0.9 6.803e-01 0.219655 0.8893 0.246994 -#> ds 4 m1 3 3.7 1.927e+00 1.773027 0.9019 1.965880 -#> ds 4 m1 3 2.0 1.927e+00 0.073027 0.9019 0.080970 -#> ds 4 m1 7 3.6 4.013e+00 -0.412926 0.9483 -0.435417 -#> ds 4 m1 7 3.8 4.013e+00 -0.212926 0.9483 -0.224523 -#> ds 4 m1 14 7.1 6.604e+00 0.495843 1.0441 0.474896 -#> ds 4 m1 14 6.6 6.604e+00 -0.004157 1.0441 -0.003981 -#> ds 4 m1 28 9.5 9.077e+00 0.422700 1.1658 0.362576 -#> ds 4 m1 28 9.3 9.077e+00 0.222700 1.1658 0.191024 -#> ds 4 m1 60 8.3 8.818e+00 -0.518498 1.1520 -0.450099 -#> ds 4 m1 60 9.0 8.818e+00 0.181502 1.1520 0.157559 -#> ds 4 m1 90 6.6 6.738e+00 -0.137785 1.0500 -0.131222 -#> ds 4 m1 90 7.7 6.738e+00 0.962215 1.0500 0.916383 -#> ds 4 m1 120 3.7 4.794e+00 -1.093754 0.9732 -1.123914 -#> ds 4 m1 120 3.5 4.794e+00 -1.293754 0.9732 -1.329429 -#> ds 5 parent 0 110.4 1.005e+02 9.937607 8.4135 1.181155 -#> ds 5 parent 0 112.1 1.005e+02 11.637607 8.4135 1.383212 -#> ds 5 parent 1 93.5 9.372e+01 -0.215694 7.8550 -0.027460 -#> ds 5 parent 1 91.0 9.372e+01 -2.715694 7.8550 -0.345730 -#> ds 5 parent 3 71.0 8.226e+01 -11.257156 6.9076 -1.629667 -#> ds 5 parent 3 89.7 8.226e+01 7.442844 6.9076 1.077480 -#> ds 5 parent 7 60.4 6.553e+01 -5.128464 5.5289 -0.927571 -#> ds 5 parent 7 59.1 6.553e+01 -6.428464 5.5289 -1.162699 -#> ds 5 parent 14 56.5 4.835e+01 8.146351 4.1235 1.975572 -#> ds 5 parent 14 47.0 4.835e+01 -1.353649 4.1235 -0.328273 -#> ds 5 parent 28 30.2 3.300e+01 -2.803303 2.8883 -0.970586 -#> ds 5 parent 28 23.9 3.300e+01 -9.103303 2.8883 -3.151832 -#> ds 5 parent 60 17.0 1.891e+01 -1.905909 1.8074 -1.054506 -#> ds 5 parent 60 18.7 1.891e+01 -0.205909 1.8074 -0.113926 -#> ds 5 parent 90 11.3 1.172e+01 -0.423434 1.3194 -0.320923 -#> ds 5 parent 90 11.9 1.172e+01 0.176566 1.3194 0.133820 -#> ds 5 parent 120 9.0 7.281e+00 1.719138 1.0749 1.599402 -#> ds 5 parent 120 8.1 7.281e+00 0.819138 1.0749 0.762086 -#> ds 5 m1 0 0.7 -2.842e-13 0.700000 0.8875 0.788726 -#> ds 5 m1 1 3.0 3.252e+00 -0.252227 0.9279 -0.271821 -#> ds 5 m1 1 2.6 3.252e+00 -0.652227 0.9279 -0.702895 -#> ds 5 m1 3 5.1 8.615e+00 -3.515326 1.1413 -3.080237 -#> ds 5 m1 3 7.5 8.615e+00 -1.115326 1.1413 -0.977283 -#> ds 5 m1 7 16.5 1.588e+01 0.619041 1.5928 0.388661 -#> ds 5 m1 7 19.0 1.588e+01 3.119041 1.5928 1.958272 -#> ds 5 m1 14 22.9 2.189e+01 1.014705 2.0272 0.500543 -#> ds 5 m1 14 23.2 2.189e+01 1.314705 2.0272 0.648529 -#> ds 5 m1 28 22.2 2.369e+01 -1.487604 2.1632 -0.687701 -#> ds 5 m1 28 24.4 2.369e+01 0.712396 2.1632 0.329332 -#> ds 5 m1 60 15.5 1.869e+01 -3.193942 1.7920 -1.782295 -#> ds 5 m1 60 19.8 1.869e+01 1.106058 1.7920 0.617206 -#> ds 5 m1 90 14.9 1.380e+01 1.103454 1.4518 0.760041 -#> ds 5 m1 90 14.2 1.380e+01 0.403454 1.4518 0.277892 -#> ds 5 m1 120 10.9 9.864e+00 1.035963 1.2093 0.856637 -#> ds 5 m1 120 10.4 9.864e+00 0.535963 1.2093 0.443187 +#> ds name time observed predicted residual std standardized +#> ds 1 parent 0 89.8 1.007e+02 -10.93344 8.4439 -1.29483 +#> ds 1 parent 0 104.1 1.007e+02 3.36656 8.4439 0.39870 +#> ds 1 parent 1 88.7 9.591e+01 -7.20789 8.0440 -0.89606 +#> ds 1 parent 1 95.5 9.591e+01 -0.40789 8.0440 -0.05071 +#> ds 1 parent 3 81.8 8.712e+01 -5.31561 7.3159 -0.72658 +#> ds 1 parent 3 94.5 8.712e+01 7.38439 7.3159 1.00936 +#> ds 1 parent 7 71.5 7.246e+01 -0.95675 6.1047 -0.15672 +#> ds 1 parent 7 70.3 7.246e+01 -2.15675 6.1047 -0.35329 +#> ds 1 parent 14 54.2 5.382e+01 0.38143 4.5729 0.08341 +#> ds 1 parent 14 49.6 5.382e+01 -4.21857 4.5729 -0.92251 +#> ds 1 parent 28 31.5 3.230e+01 -0.80120 2.8344 -0.28267 +#> ds 1 parent 28 28.8 3.230e+01 -3.50120 2.8344 -1.23524 +#> ds 1 parent 60 12.1 1.307e+01 -0.97165 1.4038 -0.69215 +#> ds 1 parent 60 13.6 1.307e+01 0.52835 1.4038 0.37637 +#> ds 1 parent 90 6.2 6.353e+00 -0.15285 1.0314 -0.14820 +#> ds 1 parent 90 8.3 6.353e+00 1.94715 1.0314 1.88790 +#> ds 1 parent 120 2.2 3.175e+00 -0.97462 0.9238 -1.05506 +#> ds 1 parent 120 2.4 3.175e+00 -0.77462 0.9238 -0.83855 +#> ds 1 m1 1 0.3 1.183e+00 -0.88350 0.8905 -0.99212 +#> ds 1 m1 1 0.2 1.183e+00 -0.98350 0.8905 -1.10441 +#> ds 1 m1 3 2.2 3.281e+00 -1.08106 0.9263 -1.16703 +#> ds 1 m1 3 3.0 3.281e+00 -0.28106 0.9263 -0.30341 +#> ds 1 m1 7 6.5 6.564e+00 -0.06353 1.0405 -0.06106 +#> ds 1 m1 7 5.0 6.564e+00 -1.56353 1.0405 -1.50266 +#> ds 1 m1 14 10.2 1.015e+01 0.05147 1.2243 0.04204 +#> ds 1 m1 14 9.5 1.015e+01 -0.64853 1.2243 -0.52970 +#> ds 1 m1 28 12.2 1.265e+01 -0.44824 1.3766 -0.32561 +#> ds 1 m1 28 13.4 1.265e+01 0.75176 1.3766 0.54610 +#> ds 1 m1 60 11.8 1.078e+01 1.02355 1.2611 0.81165 +#> ds 1 m1 60 13.2 1.078e+01 2.42355 1.2611 1.92181 +#> ds 1 m1 90 6.6 7.698e+00 -1.09840 1.0932 -1.00474 +#> ds 1 m1 90 9.3 7.698e+00 1.60160 1.0932 1.46502 +#> ds 1 m1 120 3.5 5.199e+00 -1.69853 0.9854 -1.72363 +#> ds 1 m1 120 5.4 5.199e+00 0.20147 0.9854 0.20445 +#> ds 2 parent 0 118.0 1.007e+02 17.26656 8.4439 2.04485 +#> ds 2 parent 0 99.8 1.007e+02 -0.93344 8.4439 -0.11055 +#> ds 2 parent 1 90.2 9.584e+01 -5.63852 8.0382 -0.70146 +#> ds 2 parent 1 94.6 9.584e+01 -1.23852 8.0382 -0.15408 +#> ds 2 parent 3 96.1 8.706e+01 9.04068 7.3113 1.23654 +#> ds 2 parent 3 78.4 8.706e+01 -8.65932 7.3113 -1.18438 +#> ds 2 parent 7 77.9 7.286e+01 5.04438 6.1376 0.82188 +#> ds 2 parent 7 77.7 7.286e+01 4.84438 6.1376 0.78930 +#> ds 2 parent 14 56.0 5.567e+01 0.33336 4.7242 0.07057 +#> ds 2 parent 14 54.7 5.567e+01 -0.96664 4.7242 -0.20462 +#> ds 2 parent 28 36.6 3.705e+01 -0.44800 3.2127 -0.13944 +#> ds 2 parent 28 36.8 3.705e+01 -0.24800 3.2127 -0.07719 +#> ds 2 parent 60 22.1 2.008e+01 2.01984 1.8935 1.06672 +#> ds 2 parent 60 24.7 2.008e+01 4.61984 1.8935 2.43984 +#> ds 2 parent 90 12.4 1.253e+01 -0.12814 1.3689 -0.09360 +#> ds 2 parent 90 10.8 1.253e+01 -1.72814 1.3689 -1.26238 +#> ds 2 parent 120 6.8 7.916e+00 -1.11595 1.1040 -1.01085 +#> ds 2 parent 120 7.9 7.916e+00 -0.01595 1.1040 -0.01445 +#> ds 2 m1 1 1.3 1.317e+00 -0.01669 0.8918 -0.01871 +#> ds 2 m1 3 3.7 3.613e+00 0.08699 0.9349 0.09305 +#> ds 2 m1 3 4.7 3.613e+00 1.08699 0.9349 1.16270 +#> ds 2 m1 7 8.1 7.092e+00 1.00781 1.0643 0.94688 +#> ds 2 m1 7 7.9 7.092e+00 0.80781 1.0643 0.75897 +#> ds 2 m1 14 10.1 1.066e+01 -0.56458 1.2545 -0.45006 +#> ds 2 m1 14 10.3 1.066e+01 -0.36458 1.2545 -0.29063 +#> ds 2 m1 28 10.7 1.281e+01 -2.11106 1.3870 -1.52201 +#> ds 2 m1 28 12.2 1.281e+01 -0.61106 1.3870 -0.44055 +#> ds 2 m1 60 10.7 1.078e+01 -0.08464 1.2616 -0.06709 +#> ds 2 m1 60 12.5 1.078e+01 1.71536 1.2616 1.35970 +#> ds 2 m1 90 9.1 8.013e+00 1.08684 1.1088 0.98016 +#> ds 2 m1 90 7.4 8.013e+00 -0.61316 1.1088 -0.55298 +#> ds 2 m1 120 6.1 5.749e+00 0.35063 1.0065 0.34838 +#> ds 2 m1 120 4.5 5.749e+00 -1.24937 1.0065 -1.24133 +#> ds 3 parent 0 106.2 1.007e+02 5.46656 8.4439 0.64740 +#> ds 3 parent 0 106.9 1.007e+02 6.16656 8.4439 0.73030 +#> ds 3 parent 1 107.4 9.369e+01 13.70530 7.8606 1.74354 +#> ds 3 parent 1 96.1 9.369e+01 2.40530 7.8606 0.30599 +#> ds 3 parent 3 79.4 8.185e+01 -2.45363 6.8807 -0.35660 +#> ds 3 parent 3 82.6 8.185e+01 0.74637 6.8807 0.10847 +#> ds 3 parent 7 63.9 6.487e+01 -0.97153 5.4798 -0.17729 +#> ds 3 parent 7 62.4 6.487e+01 -2.47153 5.4798 -0.45103 +#> ds 3 parent 14 51.0 4.791e+01 3.09024 4.0908 0.75542 +#> ds 3 parent 14 47.1 4.791e+01 -0.80976 4.0908 -0.19795 +#> ds 3 parent 28 36.1 3.313e+01 2.97112 2.9001 1.02450 +#> ds 3 parent 28 36.6 3.313e+01 3.47112 2.9001 1.19691 +#> ds 3 parent 60 20.1 1.927e+01 0.83265 1.8339 0.45404 +#> ds 3 parent 60 19.8 1.927e+01 0.53265 1.8339 0.29045 +#> ds 3 parent 90 11.3 1.203e+01 -0.72783 1.3374 -0.54421 +#> ds 3 parent 90 10.7 1.203e+01 -1.32783 1.3374 -0.99284 +#> ds 3 parent 120 8.2 7.516e+00 0.68382 1.0844 0.63061 +#> ds 3 parent 120 7.3 7.516e+00 -0.21618 1.0844 -0.19936 +#> ds 3 m1 0 0.8 -9.948e-14 0.80000 0.8850 0.90392 +#> ds 3 m1 1 1.8 1.682e+00 0.11759 0.8961 0.13123 +#> ds 3 m1 1 2.3 1.682e+00 0.61759 0.8961 0.68921 +#> ds 3 m1 3 4.2 4.431e+00 -0.23052 0.9590 -0.24037 +#> ds 3 m1 3 4.1 4.431e+00 -0.33052 0.9590 -0.34465 +#> ds 3 m1 7 6.8 8.084e+00 -1.28422 1.1124 -1.15445 +#> ds 3 m1 7 10.1 8.084e+00 2.01578 1.1124 1.81208 +#> ds 3 m1 14 11.4 1.100e+01 0.40274 1.2743 0.31606 +#> ds 3 m1 14 12.8 1.100e+01 1.80274 1.2743 1.41474 +#> ds 3 m1 28 11.5 1.176e+01 -0.25977 1.3207 -0.19669 +#> ds 3 m1 28 10.6 1.176e+01 -1.15977 1.3207 -0.87813 +#> ds 3 m1 60 7.5 9.277e+00 -1.77696 1.1753 -1.51190 +#> ds 3 m1 60 8.6 9.277e+00 -0.67696 1.1753 -0.57598 +#> ds 3 m1 90 7.3 6.883e+00 0.41708 1.0548 0.39542 +#> ds 3 m1 90 8.1 6.883e+00 1.21708 1.0548 1.15389 +#> ds 3 m1 120 5.3 4.948e+00 0.35179 0.9764 0.36028 +#> ds 3 m1 120 3.8 4.948e+00 -1.14821 0.9764 -1.17591 +#> ds 4 parent 0 104.7 1.007e+02 3.96656 8.4439 0.46975 +#> ds 4 parent 0 88.3 1.007e+02 -12.43344 8.4439 -1.47247 +#> ds 4 parent 1 94.2 9.738e+01 -3.18358 8.1663 -0.38985 +#> ds 4 parent 1 94.6 9.738e+01 -2.78358 8.1663 -0.34086 +#> ds 4 parent 3 78.1 9.110e+01 -12.99595 7.6454 -1.69984 +#> ds 4 parent 3 96.5 9.110e+01 5.40405 7.6454 0.70684 +#> ds 4 parent 7 76.2 8.000e+01 -3.79797 6.7273 -0.56456 +#> ds 4 parent 7 77.8 8.000e+01 -2.19797 6.7273 -0.32672 +#> ds 4 parent 14 70.8 6.446e+01 6.34396 5.4456 1.16496 +#> ds 4 parent 14 67.3 6.446e+01 2.84396 5.4456 0.52225 +#> ds 4 parent 28 43.1 4.359e+01 -0.48960 3.7400 -0.13091 +#> ds 4 parent 28 45.1 4.359e+01 1.51040 3.7400 0.40385 +#> ds 4 parent 60 21.3 2.095e+01 0.35282 1.9577 0.18022 +#> ds 4 parent 60 23.5 2.095e+01 2.55282 1.9577 1.30400 +#> ds 4 parent 90 11.8 1.188e+01 -0.07874 1.3281 -0.05929 +#> ds 4 parent 90 12.1 1.188e+01 0.22126 1.3281 0.16660 +#> ds 4 parent 120 7.0 7.072e+00 -0.07245 1.0634 -0.06813 +#> ds 4 parent 120 6.2 7.072e+00 -0.87245 1.0634 -0.82041 +#> ds 4 m1 0 1.6 5.684e-14 1.60000 0.8850 1.80784 +#> ds 4 m1 1 0.9 6.960e-01 0.20399 0.8869 0.23000 +#> ds 4 m1 3 3.7 1.968e+00 1.73240 0.9001 1.92466 +#> ds 4 m1 3 2.0 1.968e+00 0.03240 0.9001 0.03599 +#> ds 4 m1 7 3.6 4.083e+00 -0.48287 0.9482 -0.50924 +#> ds 4 m1 7 3.8 4.083e+00 -0.28287 0.9482 -0.29832 +#> ds 4 m1 14 7.1 6.682e+00 0.41836 1.0457 0.40007 +#> ds 4 m1 14 6.6 6.682e+00 -0.08164 1.0457 -0.07807 +#> ds 4 m1 28 9.5 9.103e+00 0.39733 1.1658 0.34082 +#> ds 4 m1 28 9.3 9.103e+00 0.19733 1.1658 0.16926 +#> ds 4 m1 60 8.3 8.750e+00 -0.44979 1.1469 -0.39218 +#> ds 4 m1 60 9.0 8.750e+00 0.25021 1.1469 0.21817 +#> ds 4 m1 90 6.6 6.673e+00 -0.07285 1.0453 -0.06969 +#> ds 4 m1 90 7.7 6.673e+00 1.02715 1.0453 0.98261 +#> ds 4 m1 120 3.7 4.757e+00 -1.05747 0.9698 -1.09036 +#> ds 4 m1 120 3.5 4.757e+00 -1.25747 0.9698 -1.29658 +#> ds 5 parent 0 110.4 1.007e+02 9.66656 8.4439 1.14480 +#> ds 5 parent 0 112.1 1.007e+02 11.36656 8.4439 1.34612 +#> ds 5 parent 1 93.5 9.395e+01 -0.45394 7.8821 -0.05759 +#> ds 5 parent 1 91.0 9.395e+01 -2.95394 7.8821 -0.37477 +#> ds 5 parent 3 71.0 8.245e+01 -11.44783 6.9298 -1.65197 +#> ds 5 parent 3 89.7 8.245e+01 7.25217 6.9298 1.04652 +#> ds 5 parent 7 60.4 6.567e+01 -5.27002 5.5455 -0.95032 +#> ds 5 parent 7 59.1 6.567e+01 -6.57002 5.5455 -1.18475 +#> ds 5 parent 14 56.5 4.847e+01 8.03029 4.1364 1.94139 +#> ds 5 parent 14 47.0 4.847e+01 -1.46971 4.1364 -0.35532 +#> ds 5 parent 28 30.2 3.309e+01 -2.89206 2.8971 -0.99825 +#> ds 5 parent 28 23.9 3.309e+01 -9.19206 2.8971 -3.17281 +#> ds 5 parent 60 17.0 1.891e+01 -1.90623 1.8076 -1.05458 +#> ds 5 parent 60 18.7 1.891e+01 -0.20623 1.8076 -0.11409 +#> ds 5 parent 90 11.3 1.168e+01 -0.38263 1.3160 -0.29076 +#> ds 5 parent 90 11.9 1.168e+01 0.21737 1.3160 0.16518 +#> ds 5 parent 120 9.0 7.230e+00 1.77031 1.0708 1.65333 +#> ds 5 parent 120 8.1 7.230e+00 0.87031 1.0708 0.81280 +#> ds 5 m1 0 0.7 -5.116e-13 0.70000 0.8850 0.79093 +#> ds 5 m1 1 3.0 3.244e+00 -0.24430 0.9254 -0.26398 +#> ds 5 m1 1 2.6 3.244e+00 -0.64430 0.9254 -0.69621 +#> ds 5 m1 3 5.1 8.592e+00 -3.49175 1.1385 -3.06686 +#> ds 5 m1 3 7.5 8.592e+00 -1.09175 1.1385 -0.95890 +#> ds 5 m1 7 16.5 1.583e+01 0.66887 1.5890 0.42093 +#> ds 5 m1 7 19.0 1.583e+01 3.16887 1.5890 1.99424 +#> ds 5 m1 14 22.9 2.181e+01 1.08658 2.0224 0.53728 +#> ds 5 m1 14 23.2 2.181e+01 1.38658 2.0224 0.68562 +#> ds 5 m1 28 22.2 2.364e+01 -1.43659 2.1600 -0.66508 +#> ds 5 m1 28 24.4 2.364e+01 0.76341 2.1600 0.35342 +#> ds 5 m1 60 15.5 1.873e+01 -3.23377 1.7950 -1.80150 +#> ds 5 m1 60 19.8 1.873e+01 1.06623 1.7950 0.59398 +#> ds 5 m1 90 14.9 1.387e+01 1.03117 1.4560 0.70822 +#> ds 5 m1 90 14.2 1.387e+01 0.33117 1.4560 0.22745 +#> ds 5 m1 120 10.9 9.937e+00 0.96270 1.2122 0.79415 +#> ds 5 m1 120 10.4 9.937e+00 0.46270 1.2122 0.38169 # }
    -- cgit v1.2.1