From e09f726134ee273b6b191c1ec6465e6f701b082b Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 21 Oct 2019 18:52:24 +0200 Subject: Improve some plotting routines, more tests Static documentation rebuilt by pkgdown --- docs/reference/synthetic_data_for_UBA_2014.html | 32 ++++++++++++------------- 1 file changed, 16 insertions(+), 16 deletions(-) (limited to 'docs/reference/synthetic_data_for_UBA_2014.html') diff --git a/docs/reference/synthetic_data_for_UBA_2014.html b/docs/reference/synthetic_data_for_UBA_2014.html index a639151b..ddc88c21 100644 --- a/docs/reference/synthetic_data_for_UBA_2014.html +++ b/docs/reference/synthetic_data_for_UBA_2014.html @@ -278,12 +278,13 @@ Compare also the code in the example section to see the degradation models." /> # This is just one example of an evaluation using the kinetic model used for # the generation of the data -fit <- mkinfit(m_synth_SFO_lin, synthetic_data_for_UBA_2014[[1]]$data, - quiet = TRUE) -plot_sep(fit)
summary(fit)
#> mkin version used for fitting: 0.9.49.6 +# \dontrun{ + fit <- mkinfit(m_synth_SFO_lin, synthetic_data_for_UBA_2014[[1]]$data, + quiet = TRUE) + plot_sep(fit)
summary(fit)
#> mkin version used for fitting: 0.9.49.6 #> R version used for fitting: 3.6.1 -#> Date of fit: Thu Sep 19 12:48:50 2019 -#> Date of summary: Thu Sep 19 12:48:50 2019 +#> Date of fit: Mon Oct 21 18:52:20 2019 +#> Date of summary: Mon Oct 21 18:52:20 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -292,21 +293,20 @@ Compare also the code in the example section to see the degradation models." /> #> #> Model predictions using solution type deSolve #> -#> Fitted using 847 model solutions performed in 2.49 s +#> Fitted using 847 model solutions performed in 2.42 s #> #> Error model: Constant variance #> #> Error model algorithm: OLS #> #> Starting values for parameters to be optimised: -#> value type -#> parent_0 101.350000 state -#> k_parent 0.100000 deparm -#> k_M1 0.100100 deparm -#> k_M2 0.100200 deparm -#> f_parent_to_M1 0.500000 deparm -#> f_M1_to_M2 0.500000 deparm -#> sigma 2.273126 error +#> value type +#> parent_0 101.3500 state +#> k_parent 0.1000 deparm +#> k_M1 0.1001 deparm +#> k_M2 0.1002 deparm +#> f_parent_to_M1 0.5000 deparm +#> f_M1_to_M2 0.5000 deparm #> #> Starting values for the transformed parameters actually optimised: #> value lower upper @@ -316,7 +316,6 @@ Compare also the code in the example section to see the degradation models." /> #> log_k_M2 -2.300587 -Inf Inf #> f_parent_ilr_1 0.000000 -Inf Inf #> f_M1_ilr_1 0.000000 -Inf Inf -#> sigma 2.273126 0 Inf #> #> Fixed parameter values: #> value type @@ -424,7 +423,8 @@ Compare also the code in the example section to see the degradation models." /> #> 90 M2 10.6 1.013e+01 0.47130 #> 90 M2 10.8 1.013e+01 0.67130 #> 120 M2 9.8 5.521e+00 4.27893 -#> 120 M2 3.3 5.521e+00 -2.22107
+#> 120 M2 3.3 5.521e+00 -2.22107
# } +