From 6211f3ef4995657798686d8d4ab43ed9406e8a08 Mon Sep 17 00:00:00 2001
From: Johannes Ranke
Date: Tue, 12 May 2020 16:34:00 +0200
Subject: Update vignettes and docs
---
docs/reference/test_data_from_UBA_2014.html | 109 ++++++++++++++--------------
1 file changed, 53 insertions(+), 56 deletions(-)
(limited to 'docs/reference/test_data_from_UBA_2014.html')
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index 0040c331..237149a5 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -10,23 +10,27 @@
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@@ -38,7 +42,6 @@
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@@ -56,7 +59,7 @@
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@@ -70,7 +73,7 @@
mkin
- 0.9.49.6
+ 0.9.50.2
@@ -114,7 +117,12 @@
@@ -144,7 +152,7 @@
A list containing three datasets as an R6 class defined by mkinds
.
- Each dataset has, among others, the following components
+ Each dataset has, among others, the following components
title
The name of the dataset, e.g. UBA_2014_WS_river
data
A data frame with the data in the form expected by mkinfit
@@ -165,23 +173,16 @@
# model).
m_ws <- mkinmod (parent_w = mkinsub ("SFO" , "parent_s" ),
parent_s = mkinsub ("SFO" , "parent_w" ))#> Successfully compiled differential equation model from auto-generated C code.
#> Warning: Observations with value of zero were removed from the data
#> Estimate se_notrans t value Pr(>t)
-#> parent_w_0 9.598567e+01 2.12351789 4.520126e+01 9.476190e-18
-#> k_parent_w_sink 3.603743e-01 0.03149282 1.144306e+01 4.126593e-09
-#> k_parent_w_parent_s 6.031371e-02 0.01603582 3.761186e+00 9.436275e-04
-#> k_parent_s_sink 5.108964e-11 0.09482736 5.387647e-10 5.000000e-01
-#> k_parent_s_parent_w 7.419672e-02 0.10737376 6.910135e-01 2.500560e-01
-#> sigma 2.982879e+00 0.50545649 5.901356e+00 1.454535e-05
-#> Lower Upper
-#> parent_w_0 91.48420503 100.4871438
-#> k_parent_w_sink 0.30668904 0.4234571
-#> k_parent_w_parent_s 0.03423904 0.1062455
-#> k_parent_s_sink 0.00000000 Inf
-#> k_parent_s_parent_w 0.02289956 0.2404043
-#> sigma 2.00184022 3.9639169
#> err.min n.optim df
-#> All data 0.09246946 5 6
-#> parent_w 0.06377096 3 3
-#> parent_s 0.20882325 2 3
#> Warning: Could not calculate correlation; no covariance matrix
#> Estimate se_notrans t value Pr(>t) Lower Upper
+#> parent_w_0 95.91998116 NA NA NA NA NA
+#> k_parent_w 0.41145375 NA NA NA NA NA
+#> k_parent_s 0.04663944 NA NA NA NA NA
+#> f_parent_w_to_parent_s 0.12467894 NA NA NA NA NA
+#> f_parent_s_to_parent_w 0.50000000 NA NA NA NA NA
+#> sigma 3.13612618 NA NA NA NA NA
#> err.min n.optim df
+#> All data 0.1090929 5 6
+#> parent_w 0.0817436 3 3
+#> parent_s 0.1619965 2 3
#> Successfully compiled differential equation model from auto-generated C code.
#> Warning: Observations with value of zero were removed from the data
#> Estimate se_notrans t value Pr(>t) Lower
-#> parent_0 76.55425584 0.859186619 89.1008474 1.113866e-26 74.755959756
-#> k_parent 0.12081956 0.004601922 26.2541544 1.077373e-16 0.111561582
-#> k_M1 0.84258649 0.806231419 1.0450926 1.545475e-01 0.113839803
-#> k_M2 0.04210878 0.017083049 2.4649453 1.170195e-02 0.018013807
-#> k_M3 0.01122919 0.007245890 1.5497322 6.885127e-02 0.002909463
-#> f_parent_to_M1 0.32240199 0.240803555 1.3388589 9.820820e-02 NA
-#> f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531224e-05 NA
-#> f_M1_to_M3 0.27921501 0.269443514 1.0362655 1.565440e-01 0.022992937
-#> f_M2_to_M3 0.55641331 0.595125445 0.9349513 1.807725e-01 0.008003317
+#> parent_0 76.55425585 0.859186419 89.1008682 1.113862e-26 74.755958727
+#> k_parent 0.12081956 0.004601919 26.2541704 1.077361e-16 0.111561576
+#> k_M1 0.84258631 0.806165101 1.0451783 1.545282e-01 0.113778787
+#> k_M2 0.04210878 0.017083048 2.4649453 1.170195e-02 0.018013823
+#> k_M3 0.01122919 0.007245869 1.5497365 6.885076e-02 0.002909418
+#> f_parent_to_M1 0.32240194 0.240785506 1.3389591 9.819219e-02 NA
+#> f_parent_to_M2 0.16099854 0.033691990 4.7785405 6.531222e-05 NA
+#> f_M1_to_M3 0.27921506 0.269425556 1.0363347 1.565282e-01 0.022977927
+#> f_M2_to_M3 0.55641328 0.595121733 0.9349571 1.807710e-01 0.008002321
#> sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778
#> Upper
-#> parent_0 78.35255192
+#> parent_0 78.35255298
#> k_parent 0.13084582
-#> k_M1 6.23641265
-#> k_M2 0.09843279
-#> k_M3 0.04333950
+#> k_M1 6.23975442
+#> k_M2 0.09843270
+#> k_M3 0.04334016
#> f_parent_to_M1 NA
#> f_parent_to_M2 NA
-#> f_M1_to_M3 0.86443083
-#> f_M2_to_M3 0.99489847
+#> f_M1_to_M3 0.86450919
+#> f_M2_to_M3 0.99489910
#> sigma 1.45337221
#> err.min n.optim df
#> All data 0.09649963 9 20
#> parent 0.04721283 2 6
-#> M1 0.26551209 2 5
+#> M1 0.26551208 2 5
#> M2 0.20327575 2 5
-#> M3 0.05196549 3 4
# }
+#> M3 0.05196550 3 4
# }
-
@@ -236,7 +233,7 @@
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