From e05656d57668688b971c28e32b4cfd4d3eac4662 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 13:03:50 +0200 Subject: Correct and rebuild docs - Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown --- docs/reference/test_data_from_UBA_2014.html | 32 ++++++++++++++++++++--------- 1 file changed, 22 insertions(+), 10 deletions(-) (limited to 'docs/reference/test_data_from_UBA_2014.html') diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html index 8899ed11..5c1a3bed 100644 --- a/docs/reference/test_data_from_UBA_2014.html +++ b/docs/reference/test_data_from_UBA_2014.html @@ -16,13 +16,15 @@ - + + - - + + + @@ -48,6 +50,7 @@ + @@ -117,6 +120,7 @@ +
@@ -142,7 +146,9 @@ Each dataset has, among others, the following components

title

The name of the dataset, e.g. UBA_2014_WS_river

data

A data frame with the data in the form expected by mkinfit

-
+ + +

Source

@@ -151,7 +157,8 @@

Examples

- 
  
  # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
+    
  # \dontrun{
+  # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
   # guidance. Due to the strong correlation of the parameter estimates, the
   # covariance matrix is not returned. Note that level P-II evaluations are
   # generally considered deprecated due to the frequent occurrence of such
@@ -159,7 +166,7 @@
   # model).
   m_ws <- mkinmod(parent_w = mkinsub("SFO", "parent_s"),
                   parent_s = mkinsub("SFO", "parent_w"))
#> Successfully compiled differential equation model from auto-generated C code.
  f_river <- mkinfit(m_ws, test_data_from_UBA_2014[[1]]$data, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
  plot_sep(f_river)

-  summary(f_river)$bpar
#>                         Estimate se_notrans      t value       Pr(>t)
+  summary(f_river)$bpar
#>                         Estimate se_notrans      t value       Pr(>t)
 #> parent_w_0          9.598567e+01 2.12351789 4.520126e+01 9.476190e-18
 #> k_parent_w_sink     3.603743e-01 0.03149282 1.144306e+01 4.126593e-09
 #> k_parent_w_parent_s 6.031371e-02 0.01603582 3.761186e+00 9.436275e-04
@@ -178,12 +185,12 @@
 #> parent_s 0.20882325       2  3

   # This is the evaluation used for the validation of software packages
   # in the expertise from 2014
-  m_soil <- mkinmod(parent = mkinsub("SFO", c("M1", "M2")),
+  m_soil <- mkinmod(parent = mkinsub("SFO", c("M1", "M2")),
                     M1 = mkinsub("SFO", "M3"),
                     M2 = mkinsub("SFO", "M3"),
                     M3 = mkinsub("SFO"),
                     use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.

-  f_soil <- mkinfit(m_soil, test_data_from_UBA_2014[[3]]$data, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
  plot_sep(f_soil, lpos = c("topright", "topright", "topright", "bottomright"))
  summary(f_soil)$bpar
#>                   Estimate  se_notrans    t value       Pr(>t)        Lower
+  f_soil <- mkinfit(m_soil, test_data_from_UBA_2014[[3]]$data, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
  plot_sep(f_soil, lpos = c("topright", "topright", "topright", "bottomright"))
  summary(f_soil)$bpar
#>                   Estimate  se_notrans    t value       Pr(>t)        Lower
 #> parent_0       76.55425584 0.859186619 89.1008474 1.113866e-26 74.755959756
 #> k_parent        0.12081956 0.004601922 26.2541544 1.077373e-16  0.111561582
 #> k_M1            0.84258649 0.806231419  1.0450926 1.545475e-01  0.113839803
@@ -209,7 +216,8 @@
 #> parent   0.04721283       2  6
 #> M1       0.26551209       2  5
 #> M2       0.20327575       2  5
-#> M3       0.05196549       3  4
  

+#> M3       0.05196549       3  4
  # }
+
+ + + -- cgit v1.2.1