From 09f4f904af23a34d68d5d78482a5b9e12d9a9494 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 4 Nov 2016 15:38:09 +0100
Subject: Static documentation rebuilt by pkgdown::build_site()

With updated pkgdown with my PR
---
 docs/reference/transform_odeparms.html | 19 +++++++------------
 1 file changed, 7 insertions(+), 12 deletions(-)

(limited to 'docs/reference/transform_odeparms.html')

diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index ccd56ca4..5ee1e9cc 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -61,12 +61,7 @@
       </ul>
       
       <ul class="nav navbar-nav navbar-right">
-        <li>
-  <a href="http://github.com/jranke/mkin">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
-</li>
+        
       </ul>
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
@@ -88,7 +83,7 @@
   constants and other paramters that can only take on positive values, a
   simple log transformation is used. For compositional parameters, such as
   the formations fractions that should always sum up to 1 and can not be
-  negative, the <code>ilr</code> transformation is used.</p>
+  negative, the <code><a href='ilr.html'>ilr</a></code> transformation is used.</p>
 
     <p>The transformation of sets of formation fractions is fragile, as it supposes
   the same ordering of the components in forward and backward transformation.
@@ -114,7 +109,7 @@
       <dd>
     The kinetic model of class <code><a href='mkinmod.html'>mkinmod</a></code>, containing the names of
     the model variables that are needed for grouping the formation fractions
-    before <code>ilr</code> transformation, the parameter names and 
+    before <code><a href='ilr.html'>ilr</a></code> transformation, the parameter names and 
     the information if the pathway to sink is included in the model. 
   </dd>
       <dt>transform_rates</dt>
@@ -133,7 +128,7 @@
     assumption of normal distribution of the estimator. The default (TRUE) is 
     to do transformations. The g parameter of the DFOP and HS models are also 
     transformed, as they can also be seen as compositional data. The
-    transformation used for these transformations is the <code>ilr</code>
+    transformation used for these transformations is the <code><a href='ilr.html'>ilr</a></code>
     transformation.
   </dd>
     </dl>
@@ -151,8 +146,8 @@
 <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
 <span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version:    0.9.44.9000 
 #&gt; R version:       3.3.2 
-#&gt; Date of fit:     Thu Nov  3 17:46:36 2016 
-#&gt; Date of summary: Thu Nov  3 17:46:36 2016 
+#&gt; Date of fit:     Fri Nov  4 15:36:50 2016 
+#&gt; Date of summary: Fri Nov  4 15:36:50 2016 
 #&gt; 
 #&gt; Equations:
 #&gt; d_parent = - k_parent_sink * parent - k_parent_m1 * parent
@@ -160,7 +155,7 @@
 #&gt; 
 #&gt; Model predictions using solution type deSolve 
 #&gt; 
-#&gt; Fitted with method Port using 153 model solutions performed in 0.657 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.663 s
 #&gt; 
 #&gt; Weighting: none
 #&gt; 
-- 
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