From 39b2c2c762b03922a2648b1b226d0f308600cc87 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jun 2018 01:24:15 +0200 Subject: Static documentation rebuilt by pkgdown 1.1.0 --- docs/reference/transform_odeparms.html | 37 +++++++++++++++++++++++++--------- 1 file changed, 27 insertions(+), 10 deletions(-) (limited to 'docs/reference/transform_odeparms.html') diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html index fb03cdac..3adb3a10 100644 --- a/docs/reference/transform_odeparms.html +++ b/docs/reference/transform_odeparms.html @@ -21,12 +21,15 @@ + + + - - - + + + + + + @@ -61,8 +67,12 @@ The transformation of sets of formation fractions is fragile, as it supposes - mkin + + mkin + 0.9.47.1 + + @@ -110,12 +121,15 @@ The transformation of sets of formation fractions is fragile, as it supposes -
+

Functions to transform and backtransform kinetic parameters for fitting

+ +
+

The transformations are intended to map parameters that should only take on restricted values to the full scale of real numbers. For kinetic rate @@ -127,13 +141,14 @@ The transformation of sets of formation fractions is fragile, as it supposes the same ordering of the components in forward and backward transformation. This is no problem for the internal use in mkinfit.

+ 
transform_odeparms(parms, mkinmod,
                    transform_rates = TRUE, transform_fractions = TRUE)
 backtransform_odeparms(transparms, mkinmod,
                        transform_rates = TRUE, transform_fractions = TRUE)
-

Arguments

+

Arguments

@@ -184,9 +199,9 @@ The transformation of sets of formation fractions is fragile, as it supposes m1=list(type="SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) summary(fit, data=FALSE) # See transformed and backtransformed parameters
#> mkin version used for fitting: 0.9.47.1 -#> R version used for fitting: 3.4.4 -#> Date of fit: Wed Mar 21 18:14:43 2018 -#> Date of summary: Wed Mar 21 18:14:43 2018 +#> R version used for fitting: 3.5.0 +#> Date of fit: Wed Jun 6 01:21:47 2018 +#> Date of summary: Wed Jun 6 01:21:47 2018 #> #> Equations: #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -194,7 +209,7 @@ The transformation of sets of formation fractions is fragile, as it supposes #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 153 model solutions performed in 0.585 s +#> Fitted with method Port using 153 model solutions performed in 0.628 s #> #> Weighting: none #> @@ -322,6 +337,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
+ + -- cgit v1.2.1