From 9f9336d59e68690472888bfdeb12944176d7d272 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 25 May 2020 13:01:23 +0200 Subject: First working version of saemix helper functions saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2 --- docs/reference/transform_odeparms.html | 16 ++++++---------- 1 file changed, 6 insertions(+), 10 deletions(-) (limited to 'docs/reference/transform_odeparms.html') diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html index 61ed96d7..7a9198de 100644 --- a/docs/reference/transform_odeparms.html +++ b/docs/reference/transform_odeparms.html @@ -77,7 +77,7 @@ the ilr transformation is used." /> mkin - 0.9.50.2 + 0.9.50.3 @@ -114,6 +114,9 @@ the ilr transformation is used." />
  • Example evaluation of NAFTA SOP Attachment examples
    • +
  • + Some benchmark timings +
  • @@ -211,19 +214,12 @@ fitting procedure.

    Value

    -

    A vector of transformed or backtransformed parameters with the same -names as the original parameters.

    +

    A vector of transformed or backtransformed parameters

    Details

    The transformation of sets of formation fractions is fragile, as it supposes the same ordering of the components in forward and backward transformation. This is no problem for the internal use in mkinfit.

    -

    Functions

    - - -

    Examples

    
@@ -245,7 +241,7 @@ This is no problem for the internal use in mkinfit<
 #> sigma           3.12550    0.35852    8.72 2.24e-10  2.39609   3.8549
    
 # \dontrun{
 # Compare to the version without transforming rate parameters
-fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
    #> Warning: Observations with value of zero were removed from the data
    #> Error in if (cost < cost.current) {    assign("cost.current", cost, inherits = TRUE)    if (!quiet)         cat(ifelse(OLS, "Sum of squared residuals", "Negative log-likelihood"),             " at call ", calls, ": ", cost.current, "\n", sep = "")}: Fehlender Wert, wo TRUE/FALSE nötig ist
    #> Timing stopped at: 0.003 0 0.003
    fit.2.s <- summary(fit.2)
    #> Error in summary(fit.2): Objekt 'fit.2' nicht gefunden
    print(fit.2.s$par, 3)
    #> Error in print(fit.2.s$par, 3): Objekt 'fit.2.s' nicht gefunden
    print(fit.2.s$bpar, 3)
    #> Error in print(fit.2.s$bpar, 3): Objekt 'fit.2.s' nicht gefunden
    # }
+fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
    #> Warning: Observations with value of zero were removed from the data
    #> Error in if (cost < cost.current) {    assign("cost.current", cost, inherits = TRUE)    if (!quiet)         cat(ifelse(OLS, "Sum of squared residuals", "Negative log-likelihood"),             " at call ", calls, ": ", cost.current, "\n", sep = "")}: missing value where TRUE/FALSE needed
    #> Timing stopped at: 0.002 0.001 0.002
    fit.2.s <- summary(fit.2)
    #> Error in summary(fit.2): object 'fit.2' not found
    print(fit.2.s$par, 3)
    #> Error in print(fit.2.s$par, 3): object 'fit.2.s' not found
    print(fit.2.s$bpar, 3)
    #> Error in print(fit.2.s$bpar, 3): object 'fit.2.s' not found
    # }
 
 initials <- fit$start$value
 names(initials) <- rownames(fit$start)
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