From b5ee48a86e4b1d4c05aaadb80b44954e2e994ebc Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 27 May 2020 07:12:51 +0200 Subject: Add docs generated using released version 0.9.52 --- docs/reference/transform_odeparms.html | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) (limited to 'docs/reference/transform_odeparms.html') diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html index 7a9198de..9b84d6bf 100644 --- a/docs/reference/transform_odeparms.html +++ b/docs/reference/transform_odeparms.html @@ -77,7 +77,7 @@ the ilr transformation is used." /> mkin - 0.9.50.3 + 0.9.50.2 @@ -114,9 +114,6 @@ the ilr transformation is used." />
  • Example evaluation of NAFTA SOP Attachment examples
    • -
  • - Some benchmark timings -
  • @@ -214,12 +211,19 @@ fitting procedure.

    Value

    -

    A vector of transformed or backtransformed parameters

    +

    A vector of transformed or backtransformed parameters with the same +names as the original parameters.

    Details

    The transformation of sets of formation fractions is fragile, as it supposes the same ordering of the components in forward and backward transformation. This is no problem for the internal use in mkinfit.

    +

    Functions

    + + +

    Examples

    
@@ -241,7 +245,7 @@ This is no problem for the internal use in mkinfit<
 #> sigma           3.12550    0.35852    8.72 2.24e-10  2.39609   3.8549
    
 # \dontrun{
 # Compare to the version without transforming rate parameters
-fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
    #> Warning: Observations with value of zero were removed from the data
    #> Error in if (cost < cost.current) {    assign("cost.current", cost, inherits = TRUE)    if (!quiet)         cat(ifelse(OLS, "Sum of squared residuals", "Negative log-likelihood"),             " at call ", calls, ": ", cost.current, "\n", sep = "")}: missing value where TRUE/FALSE needed
    #> Timing stopped at: 0.002 0.001 0.002
    fit.2.s <- summary(fit.2)
    #> Error in summary(fit.2): object 'fit.2' not found
    print(fit.2.s$par, 3)
    #> Error in print(fit.2.s$par, 3): object 'fit.2.s' not found
    print(fit.2.s$bpar, 3)
    #> Error in print(fit.2.s$bpar, 3): object 'fit.2.s' not found
    # }
+fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
    #> Warning: Observations with value of zero were removed from the data
    #> Error in if (cost < cost.current) {    assign("cost.current", cost, inherits = TRUE)    if (!quiet)         cat(ifelse(OLS, "Sum of squared residuals", "Negative log-likelihood"),             " at call ", calls, ": ", cost.current, "\n", sep = "")}: missing value where TRUE/FALSE needed
    #> Timing stopped at: 0.002 0 0.002
    fit.2.s <- summary(fit.2)
    #> Error in summary(fit.2): object 'fit.2' not found
    print(fit.2.s$par, 3)
    #> Error in print(fit.2.s$par, 3): object 'fit.2.s' not found
    print(fit.2.s$bpar, 3)
    #> Error in print(fit.2.s$bpar, 3): object 'fit.2.s' not found
    # }
 
 initials <- fit$start$value
 names(initials) <- rownames(fit$start)
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