From d185c26e4909efbae9dc4210ed9eac4b2600910e Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sun, 11 Mar 2018 22:12:51 +0100
Subject: Static docs rebuilt again, with current pkgdown

---
 docs/reference/transform_odeparms.html | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

(limited to 'docs/reference/transform_odeparms.html')

diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index 266db603..5c89f8e2 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -27,6 +27,18 @@
 <script src="../pkgdown.js"></script>
   
   
+<meta property="og:title" content="Functions to transform and backtransform kinetic parameters for fitting — transform_odeparms" />
+
+<meta property="og:description" content="The transformations are intended to map parameters that should only take
+  on restricted values to the full scale of real numbers. For kinetic rate
+  constants and other paramters that can only take on positive values, a
+  simple log transformation is used. For compositional parameters, such as
+  the formations fractions that should always sum up to 1 and can not be
+  negative, the ilr transformation is used.
+The transformation of sets of formation fractions is fragile, as it supposes
+  the same ordering of the components in forward and backward transformation.
+  This is no problem for the internal use in mkinfit." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -173,8 +185,8 @@
 <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
 <span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version used for fitting:    0.9.47.1 
 #&gt; R version used for fitting:       3.4.3 
-#&gt; Date of fit:     Fri Mar  9 23:08:30 2018 
-#&gt; Date of summary: Fri Mar  9 23:08:30 2018 
+#&gt; Date of fit:     Sun Mar 11 22:10:42 2018 
+#&gt; Date of summary: Sun Mar 11 22:10:42 2018 
 #&gt; 
 #&gt; Equations:
 #&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -182,7 +194,7 @@
 #&gt; 
 #&gt; Model predictions using solution type deSolve 
 #&gt; 
-#&gt; Fitted with method Port using 153 model solutions performed in 0.657 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.564 s
 #&gt; 
 #&gt; Weighting: none
 #&gt; 
@@ -312,3 +324,4 @@
 
   </body>
 </html>
+
-- 
cgit v1.2.1