From 1f100167f4f399062fb077ceb983f50384eccaec Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 18 Sep 2018 15:20:30 +0200 Subject: Static documentation rebuilt by pkgdown --- docs/reference/Extract.mmkin.html | 12 +++--- docs/reference/mccall81_245T.html | 12 +++--- docs/reference/mkinfit.html | 46 ++++++++++---------- docs/reference/mkinmod.html | 2 +- docs/reference/mkinpredict.html | 76 ++++++++++++++++++++++++++-------- docs/reference/mmkin.html | 4 +- docs/reference/summary.mkinfit.html | 4 +- docs/reference/transform_odeparms.html | 24 +++++------ 8 files changed, 110 insertions(+), 70 deletions(-) (limited to 'docs/reference') diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index 39a8bb84..0447e2d9 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -278,7 +278,7 @@ #> #> $time #> User System verstrichen -#> 0.161 0.000 0.162 +#> 0.175 0.000 0.175 #> #> $mkinmod #> <mkinmod> model generated with @@ -467,8 +467,8 @@ #> } #> return(mC) #> } -#> <bytecode: 0x55555bd56848> -#> <environment: 0x55555bd53cb0> +#> <bytecode: 0x55555bd99510> +#> <environment: 0x55555bc57c88> #> #> $cost_notrans #> function (P) @@ -490,8 +490,8 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <bytecode: 0x55555c9bc2c0> -#> <environment: 0x55555bd53cb0> +#> <bytecode: 0x55555cb90200> +#> <environment: 0x55555bc57c88> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -558,7 +558,7 @@ #> 99.17407 #> #> $date -#> [1] "Tue Sep 18 09:49:15 2018" +#> [1] "Tue Sep 18 15:16:36 2018" #> #> $version #> [1] "0.9.47.6" diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index 042073f2..be77df76 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -158,8 +158,8 @@ anisole = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), quiet = TRUE) summary(fit.1, data = FALSE)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:26 2018 -#> Date of summary: Tue Sep 18 09:49:26 2018 +#> Date of fit: Tue Sep 18 15:16:48 2018 +#> Date of summary: Tue Sep 18 15:16:48 2018 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -169,7 +169,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 574 model solutions performed in 3.213 s +#> Fitted with method Port using 574 model solutions performed in 3.602 s #> #> Weighting: none #> @@ -247,8 +247,8 @@ fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:27 2018 -#> Date of summary: Tue Sep 18 09:49:27 2018 +#> Date of fit: Tue Sep 18 15:16:50 2018 +#> Date of summary: Tue Sep 18 15:16:50 2018 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -258,7 +258,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 246 model solutions performed in 1.363 s +#> Fitted with method Port using 246 model solutions performed in 1.513 s #> #> Weighting: none #> diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 1ae53f8a..3c8442b6 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -434,15 +434,15 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:30 2018 -#> Date of summary: Tue Sep 18 09:49:30 2018 +#> Date of fit: Tue Sep 18 15:16:52 2018 +#> Date of summary: Tue Sep 18 15:16:52 2018 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.14 s +#> Fitted with method Port using 64 model solutions performed in 0.158 s #> #> Weighting: none #> @@ -511,7 +511,7 @@ m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> User System verstrichen -#> 0.872 0.001 0.874
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 1.011 0.000 1.012
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -586,7 +586,7 @@ #> Model cost at call 146 : 371.2134 #> Optimisation by method Port successfully terminated. #> User System verstrichen -#> 0.690 0.000 0.689
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.755 0.000 0.755
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -624,8 +624,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:40 2018 -#> Date of summary: Tue Sep 18 09:49:40 2018 +#> Date of fit: Tue Sep 18 15:17:04 2018 +#> Date of summary: Tue Sep 18 15:17:04 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -633,7 +633,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 186 model solutions performed in 0.725 s +#> Fitted with method Port using 186 model solutions performed in 0.823 s #> #> Weighting: none #> @@ -741,8 +741,8 @@ #> 120 m1 33.31 28.78984 4.520e+00
f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:42 2018 -#> Date of summary: Tue Sep 18 09:49:42 2018 +#> Date of fit: Tue Sep 18 15:17:06 2018 +#> Date of summary: Tue Sep 18 15:17:06 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -750,7 +750,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 551 model solutions performed in 2.147 s +#> Fitted with method Port using 551 model solutions performed in 2.374 s #> #> Weighting: none #> @@ -863,8 +863,8 @@ #> 120 m1 33.31 28.80898 4.501e+00 2.722
f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:43 2018 -#> Date of summary: Tue Sep 18 09:49:43 2018 +#> Date of fit: Tue Sep 18 15:17:07 2018 +#> Date of summary: Tue Sep 18 15:17:07 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -872,7 +872,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.603 s +#> Fitted with method Port using 155 model solutions performed in 0.636 s #> #> Weighting: mean #> @@ -981,8 +981,8 @@ quiet = TRUE) summary(f.w.value)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:44 2018 -#> Date of summary: Tue Sep 18 09:49:44 2018 +#> Date of fit: Tue Sep 18 15:17:08 2018 +#> Date of summary: Tue Sep 18 15:17:08 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -990,7 +990,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.69 s +#> Fitted with method Port using 174 model solutions performed in 0.717 s #> #> Weighting: manual #> @@ -1101,8 +1101,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:45 2018 -#> Date of summary: Tue Sep 18 09:49:45 2018 +#> Date of fit: Tue Sep 18 15:17:09 2018 +#> Date of summary: Tue Sep 18 15:17:09 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1110,7 +1110,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 270 model solutions performed in 1.133 s +#> Fitted with method Port using 270 model solutions performed in 1.181 s #> #> Weighting: manual #> @@ -1219,8 +1219,8 @@ reweight.method = "obs") summary(f.w.man.irls)
#> mkin version used for fitting: 0.9.47.6 #> R version used for fitting: 3.5.1 -#> Date of fit: Tue Sep 18 09:49:48 2018 -#> Date of summary: Tue Sep 18 09:49:48 2018 +#> Date of fit: Tue Sep 18 15:17:13 2018 +#> Date of summary: Tue Sep 18 15:17:13 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1228,7 +1228,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 692 model solutions performed in 2.77 s +#> Fitted with method Port using 692 model solutions performed in 3.077 s #> #> Weighting: manual #> diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index c1e7b840..af364403 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -229,7 +229,7 @@ For the definition of model types and their parameters, the equations given SFO_SFO <- mkinmod( parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"), verbose = TRUE)
#> Compilation argument: -#> /usr/lib/R/bin/R CMD SHLIB file73da22034c44.c 2> file73da22034c44.c.err.txt +#> /usr/lib/R/bin/R CMD SHLIB file20267955fc75.c 2> file20267955fc75.c.err.txt #> Program source: #> 1: #include <R.h> #> 2: diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index 5fad64de..91e9289d 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -131,16 +131,18 @@
- 
mkinpredict(mkinmod, odeparms, odeini, outtimes, solution_type = "deSolve",
-              use_compiled = "auto", method.ode = "lsoda", atol = 1e-08, rtol = 1e-10,
-        map_output = TRUE, ...)
+ 
mkinpredict(x, odeparms, odeini, outtimes = seq(0, 120, by = 0.1),
+    solution_type = "deSolve", use_compiled = "auto", method.ode = "lsoda",
+    atol = 1e-08, rtol = 1e-10, map_output = TRUE, ...)

Arguments

- - + + @@ -204,10 +206,10 @@

Examples

- 
  SFO <- mkinmod(degradinol = list(type = "SFO"))
+    
  SFO <- mkinmod(degradinol = mkinsub("SFO"))
   # Compare solution types
   mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              solution_type = "analytical")
#>    time  degradinol
+        solution_type = "analytical")
#>    time  degradinol
 #> 1     0 100.0000000
 #> 2     1  74.0818221
 #> 3     2  54.8811636
@@ -229,7 +231,7 @@
 #> 19   18   0.4516581
 #> 20   19   0.3345965
 #> 21   20   0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              solution_type = "deSolve")
#>    time  degradinol
+        solution_type = "deSolve")
#>    time  degradinol
 #> 1     0 100.0000000
 #> 2     1  74.0818221
 #> 3     2  54.8811636
@@ -251,7 +253,7 @@
 #> 19   18   0.4516581
 #> 20   19   0.3345965
 #> 21   20   0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              solution_type = "deSolve", use_compiled = FALSE)
#>    time  degradinol
+        solution_type = "deSolve", use_compiled = FALSE)
#>    time  degradinol
 #> 1     0 100.0000000
 #> 2     1  74.0818221
 #> 3     2  54.8811636
@@ -273,7 +275,7 @@
 #> 19   18   0.4516581
 #> 20   19   0.3345965
 #> 21   20   0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              solution_type = "eigen")
#>    time  degradinol
+        solution_type = "eigen")
#>    time  degradinol
 #> 1     0 100.0000000
 #> 2     1  74.0818221
 #> 3     2  54.8811636
@@ -298,21 +300,21 @@
 
   # Compare integration methods to analytical solution
   mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              solution_type = "analytical")[21,]
#>    time degradinol
+        solution_type = "analytical")[21,]
#>    time degradinol
 #> 21   20  0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              method = "lsoda")[21,]
#>    time degradinol
+        method = "lsoda")[21,]
#>    time degradinol
 #> 21   20  0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              method = "ode45")[21,]
#>    time degradinol
+        method = "ode45")[21,]
#>    time degradinol
 #> 21   20  0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
-              method = "rk4")[21,]
#>    time degradinol
+        method = "rk4")[21,]
#>    time degradinol
 #> 21   20  0.2480043
 # rk4 is not as precise here
 
   # The number of output times used to make a lot of difference until the
   # default for atol was adjusted
   mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100),
-              seq(0, 20, by = 0.1))[201,]
#>     time degradinol
+        seq(0, 20, by = 0.1))[201,]
#>     time degradinol
 #> 201   20  0.2478752
  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100),
-              seq(0, 20, by = 0.01))[2001,]
#>      time degradinol
+        seq(0, 20, by = 0.01))[2001,]
#>      time degradinol
 #> 2001   20  0.2478752

   # Check compiled model versions - they are faster than the eigenvalue based solutions!
   SFO_SFO = mkinmod(parent = list(type = "SFO", to = "m1"),
@@ -321,7 +323,7 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "eigen")[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>        User      System verstrichen 
-#>       0.003       0.000       0.003 
  system.time(
+#>       0.003       0.000       0.004 
  system.time(
     print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01),
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve")[201,]))
#>     time   parent       m1
@@ -331,7 +333,45 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve", use_compiled = FALSE)[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>        User      System verstrichen 
-#>       0.033       0.000       0.034 

+#>       0.034       0.000       0.034 

+  
    # Predict from a fitted model
+    f <- mkinfit(SFO_SFO, FOCUS_2006_C)
#> Model cost at call  1 :  552.5739 
+#> Model cost at call  3 :  552.5739 
+#> Model cost at call  4 :  552.5739 
+#> Model cost at call  6 :  279.9345 
+#> Model cost at call  7 :  279.9344 
+#> Model cost at call  8 :  279.9294 
+#> Model cost at call  9 :  279.9294 
+#> Model cost at call  12 :  200.3629 
+#> Model cost at call  13 :  200.3629 
+#> Model cost at call  18 :  197.9039 
+#> Model cost at call  23 :  197.9039 
+#> Model cost at call  25 :  196.6754 
+#> Model cost at call  27 :  196.6754 
+#> Model cost at call  32 :  196.5742 
+#> Model cost at call  33 :  196.5742 
+#> Model cost at call  34 :  196.5742 
+#> Model cost at call  38 :  196.5361 
+#> Model cost at call  40 :  196.5361 
+#> Model cost at call  44 :  196.5336 
+#> Model cost at call  45 :  196.5336 
+#> Model cost at call  50 :  196.5334 
+#> Model cost at call  51 :  196.5334 
+#> Model cost at call  52 :  196.5334 
+#> Model cost at call  56 :  196.5334 
+#> Model cost at call  58 :  196.5334 
+#> Model cost at call  59 :  196.5334 
+#> Model cost at call  65 :  196.5334 
+#> Model cost at call  73 :  196.5334 
+#> Model cost at call  78 :  196.5334 
+#> Model cost at call  80 :  196.5334 
+#> Optimisation by method Port successfully terminated.
    head(mkinpredict(f))
#>   time   parent       m1
+#> 1  0.0 82.49216 0.000000
+#> 2  0.1 80.00563 1.179955
+#> 3  0.2 77.59404 2.312580
+#> 4  0.3 75.25515 3.399419
+#> 5  0.4 72.98675 4.441969
+#> 6  0.5 70.78673 5.441679
#> User System verstrichen -#> 0.043 0.040 6.475
time_1
#> User System verstrichen -#> 19.165 0.000 19.179
+#> 0.054 0.027 6.836
time_1
#> User System verstrichen +#> 20.444 0.000 20.459
endpoints(fits.0[["SFO_lin", 2]])
#> $ff #> parent_M1 parent_sink M1_M2 M1_sink #> 0.7340480 0.2659520 0.7505686 0.2494314 diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index 0af65ed8..f8e09b45 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -206,8 +206,8 @@

Examples

  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Tue Sep 18 09:50:32 2018 
-#> Date of summary: Tue Sep 18 09:50:32 2018 
+#> Date of fit:     Tue Sep 18 15:17:59 2018 
+#> Date of summary: Tue Sep 18 15:17:59 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index ce6f6c8d..f2602792 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -200,8 +200,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
 summary(fit, data=FALSE) # See transformed and backtransformed parameters
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Tue Sep 18 09:50:39 2018 
-#> Date of summary: Tue Sep 18 09:50:39 2018 
+#> Date of fit:     Tue Sep 18 15:18:06 2018 
+#> Date of summary: Tue Sep 18 15:18:06 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -209,7 +209,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 153 model solutions performed in 0.586 s
+#> Fitted with method Port using 153 model solutions performed in 0.662 s
 #> 
 #> Weighting: none
 #> 
@@ -276,8 +276,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 
fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
 summary(fit.2, data=FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Tue Sep 18 09:50:41 2018 
-#> Date of summary: Tue Sep 18 09:50:41 2018 
+#> Date of fit:     Tue Sep 18 15:18:08 2018 
+#> Date of summary: Tue Sep 18 15:18:08 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -285,7 +285,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 350 model solutions performed in 1.341 s
+#> Fitted with method Port using 350 model solutions performed in 1.342 s
 #> 
 #> Weighting: none
 #> 
@@ -364,8 +364,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit.ff <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
 summary(fit.ff, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Tue Sep 18 09:50:42 2018 
-#> Date of summary: Tue Sep 18 09:50:42 2018 
+#> Date of fit:     Tue Sep 18 15:18:09 2018 
+#> Date of summary: Tue Sep 18 15:18:09 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -373,7 +373,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 186 model solutions performed in 0.73 s
+#> Fitted with method Port using 186 model solutions performed in 0.737 s
 #> 
 #> Weighting: none
 #> 
@@ -448,8 +448,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit.ff.2 <- mkinfit(SFO_SFO.ff.2, FOCUS_2006_D, quiet = TRUE)
 summary(fit.ff.2, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Tue Sep 18 09:50:42 2018 
-#> Date of summary: Tue Sep 18 09:50:42 2018 
+#> Date of fit:     Tue Sep 18 15:18:10 2018 
+#> Date of summary: Tue Sep 18 15:18:10 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -457,7 +457,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 104 model solutions performed in 0.401 s
+#> Fitted with method Port using 104 model solutions performed in 0.414 s
 #> 
 #> Weighting: none
 #> 
-- 
cgit v1.2.1
mkinmod

A kinetic model as produced by mkinmod.

x

A kinetic model as produced by mkinmod, or a kinetic + fit as fitted by mkinfit. In the latter case, the fitted + parameters are used for the prediction.
odeparms