From 6ea7bc3614b9a303f7c38dd63b9f80b8d0ebd95e Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 21 Mar 2018 18:16:52 +0100 Subject: Static documentation rebuilt by pkgdown --- docs/reference/Extract.mmkin.html | 14 +++++++------- docs/reference/mccall81_245T.html | 8 ++++---- docs/reference/mkinfit.html | 10 +++++----- docs/reference/mkinpredict.html | 4 ++-- docs/reference/mmkin.html | 4 +++- docs/reference/summary.mkinfit.html | 8 ++++---- docs/reference/transform_odeparms.html | 8 ++++---- 7 files changed, 29 insertions(+), 27 deletions(-) (limited to 'docs/reference') diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index e554432f..2a3b1c78 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -263,7 +263,7 @@ #> #> $time #> user system elapsed -#> 0.234 0.000 0.234 +#> 0.242 0.000 0.244 #> #> $mkinmod #> <mkinmod> model generated with @@ -452,8 +452,8 @@ #> } #> return(mC) #> } -#> <bytecode: 0x5555578e66e0> -#> <environment: 0x555559cd9780> +#> <bytecode: 0x5555578ff9d0> +#> <environment: 0x555559a0da40> #> #> $cost_notrans #> function (P) @@ -475,8 +475,8 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <bytecode: 0x55555acf3f50> -#> <environment: 0x555559cd9780> +#> <bytecode: 0x555559b90d60> +#> <environment: 0x555559a0da40> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -543,13 +543,13 @@ #> 99.17407 #> #> $date -#> [1] "Sun Mar 11 22:10:21 2018" +#> [1] "Wed Mar 21 18:14:20 2018" #> #> $version #> [1] "0.9.47.1" #> #> $Rversion -#> [1] "3.4.3" +#> [1] "3.4.4" #> #> attr(,"class") #> [1] "mkinfit" "modFit" diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index 80cac442..cb70e68c 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -150,9 +150,9 @@ parms.ini = c(k_phenol_sink = 0), fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE)
#> mkin version used for fitting: 0.9.47.1 -#> R version used for fitting: 3.4.3 -#> Date of fit: Sun Mar 11 22:10:30 2018 -#> Date of summary: Sun Mar 11 22:10:30 2018 +#> R version used for fitting: 3.4.4 +#> Date of fit: Wed Mar 21 18:14:30 2018 +#> Date of summary: Wed Mar 21 18:14:30 2018 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -162,7 +162,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 246 model solutions performed in 1.318 s +#> Fitted with method Port using 246 model solutions performed in 1.403 s #> #> Weighting: none #> diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 991df1cc..8ac8295f 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -413,16 +413,16 @@ 
# Use shorthand notation for parent only degradation
 fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE)
 summary(fit)
#> mkin version used for fitting:    0.9.47.1 
-#> R version used for fitting:       3.4.3 
-#> Date of fit:     Sun Mar 11 22:10:32 2018 
-#> Date of summary: Sun Mar 11 22:10:32 2018 
+#> R version used for fitting:       3.4.4 
+#> Date of fit:     Wed Mar 21 18:14:33 2018 
+#> Date of summary: Wed Mar 21 18:14:33 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 #> 
 #> Model predictions using solution type analytical 
 #> 
-#> Fitted with method Port using 64 model solutions performed in 0.135 s
+#> Fitted with method Port using 64 model solutions performed in 0.14 s
 #> 
 #> Weighting: none
 #> 
@@ -491,7 +491,7 @@
   m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults
 print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D,
                            solution_type = "eigen", quiet = TRUE)))
#>    user  system elapsed 
-#>   0.829   0.000   0.829 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
+#>   0.834   0.000   0.835 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
 #>          99.59848          -3.03822          -2.98030          -5.24750 
endpoints(fit)
#> $ff
 #> parent_sink   parent_m1     m1_sink 
 #>    0.485524    0.514476    1.000000 
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html
index 044b2d92..4768215b 100644
--- a/docs/reference/mkinpredict.html
+++ b/docs/reference/mkinpredict.html
@@ -306,7 +306,7 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "eigen")[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>    user  system elapsed 
-#>   0.002   0.000   0.003 
  system.time(
+#>   0.003   0.000   0.003 
  system.time(
     print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01),
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve")[201,]))
#>     time   parent       m1
@@ -316,7 +316,7 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve", use_compiled = FALSE)[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>    user  system elapsed 
-#>   0.029   0.000   0.029
+#> 0.033 0.000 0.032