From 7035cde3a53781721fe15a8893fdf328c789bdd2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 7 Mar 2022 12:03:40 +0100 Subject: Remove nlmixr interface for release of mkin 1.1.0 I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). --- docs/reference/AIC.mmkin.html | 2 +- docs/reference/CAKE_export.html | 2 +- docs/reference/D24_2014.html | 2 +- docs/reference/DFOP.solution.html | 2 +- docs/reference/Extract.mmkin.html | 2 +- docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html | 2 +- docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html | 2 +- docs/reference/FOCUS_2006_HS_ref_A_to_F.html | 2 +- docs/reference/FOCUS_2006_SFO_ref_A_to_F.html | 2 +- docs/reference/FOCUS_2006_datasets.html | 2 +- docs/reference/FOMC.solution.html | 2 +- docs/reference/HS.solution.html | 2 +- docs/reference/IORE.solution.html | 2 +- docs/reference/NAFTA_SOP_2015.html | 2 +- docs/reference/NAFTA_SOP_Attachment.html | 2 +- docs/reference/Rplot001.png | Bin 1011 -> 14083 bytes docs/reference/Rplot002.png | Bin 60607 -> 13699 bytes docs/reference/Rplot003.png | Bin 15369 -> 48687 bytes docs/reference/Rplot004.png | Bin 10665 -> 59260 bytes docs/reference/SFO.solution.html | 2 +- docs/reference/SFORB.solution.html | 2 +- docs/reference/add_err.html | 2 +- docs/reference/aw.html | 2 +- docs/reference/confint.mkinfit.html | 6 +- docs/reference/create_deg_func.html | 10 +- docs/reference/dimethenamid_2018.html | 518 +----------------------- docs/reference/endpoints.html | 6 +- docs/reference/experimental_data_for_UBA.html | 2 +- docs/reference/f_time_norm_focus.html | 2 +- docs/reference/focus_soil_moisture.html | 2 +- docs/reference/get_deg_func.html | 2 +- docs/reference/ilr.html | 2 +- docs/reference/index.html | 18 +- docs/reference/intervals.saem.mmkin.html | 2 +- docs/reference/loftest.html | 2 +- docs/reference/logLik.mkinfit.html | 2 +- docs/reference/logistic.solution.html | 2 +- docs/reference/lrtest.mkinfit.html | 2 +- docs/reference/max_twa_parent.html | 2 +- docs/reference/mccall81_245T.html | 2 +- docs/reference/mean_degparms.html | 2 +- docs/reference/mixed.html | 2 +- docs/reference/mkin_long_to_wide.html | 2 +- docs/reference/mkin_wide_to_long.html | 2 +- docs/reference/mkinds.html | 2 +- docs/reference/mkindsg.html | 2 +- docs/reference/mkinerrmin.html | 2 +- docs/reference/mkinerrplot.html | 2 +- docs/reference/mkinfit.html | 20 +- docs/reference/mkinmod.html | 6 +- docs/reference/mkinparplot.html | 2 +- docs/reference/mkinplot.html | 2 +- docs/reference/mkinpredict.html | 10 +- docs/reference/mkinresplot.html | 2 +- docs/reference/mmkin.html | 6 +- docs/reference/nafta.html | 2 +- docs/reference/nlme.html | 2 +- docs/reference/nlme.mmkin.html | 2 +- docs/reference/nobs.mkinfit.html | 2 +- docs/reference/parms.html | 2 +- docs/reference/plot.mixed.mmkin-3.png | Bin 0 -> 173804 bytes docs/reference/plot.mixed.mmkin-4.png | Bin 0 -> 176780 bytes docs/reference/plot.mixed.mmkin.html | 7 +- docs/reference/plot.mkinfit.html | 2 +- docs/reference/plot.mmkin.html | 2 +- docs/reference/plot.nafta.html | 2 +- docs/reference/reexports.html | 12 +- docs/reference/residuals.mkinfit.html | 2 +- docs/reference/saem-1.png | Bin 0 -> 46419 bytes docs/reference/saem-2.png | Bin 0 -> 49282 bytes docs/reference/saem-3.png | Bin 0 -> 128609 bytes docs/reference/saem-4.png | Bin 0 -> 174097 bytes docs/reference/saem.html | 340 ++++++++++++++-- docs/reference/schaefer07_complex_case.html | 2 +- docs/reference/sigma_twocomp.html | 2 +- docs/reference/summary.mkinfit.html | 8 +- docs/reference/summary.nlme.mmkin.html | 8 +- docs/reference/summary.saem.mmkin.html | 267 +++++++++++- docs/reference/synthetic_data_for_UBA_2014.html | 8 +- docs/reference/test_data_from_UBA_2014.html | 2 +- docs/reference/transform_odeparms.html | 2 +- docs/reference/update.mkinfit.html | 2 +- 82 files changed, 692 insertions(+), 670 deletions(-) create mode 100644 docs/reference/plot.mixed.mmkin-3.png create mode 100644 docs/reference/plot.mixed.mmkin-4.png create mode 100644 docs/reference/saem-1.png create mode 100644 docs/reference/saem-2.png create mode 100644 docs/reference/saem-3.png create mode 100644 docs/reference/saem-4.png (limited to 'docs/reference') diff --git a/docs/reference/AIC.mmkin.html b/docs/reference/AIC.mmkin.html index 35becede..a049850d 100644 --- a/docs/reference/AIC.mmkin.html +++ b/docs/reference/AIC.mmkin.html @@ -27,7 +27,7 @@ same dataset.">