From 7c62da1269e8910a210ba1917d4dc62d186d5606 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 6 Oct 2016 09:40:35 +0200 Subject: Static documentation rebuilt by pkgdown::build_site() --- docs/reference/Extract.mmkin.html | 20 ++++++++++---------- docs/reference/mccall81_245T.html | 6 +++--- docs/reference/mkinfit.html | 8 ++++---- docs/reference/mkinpredict.html | 4 ++-- docs/reference/summary.mkinfit.html | 6 +++--- docs/reference/transform_odeparms.html | 6 +++--- 6 files changed, 25 insertions(+), 25 deletions(-) (limited to 'docs/reference') diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index b811eb95..1802e260 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -192,7 +192,7 @@ #> #> $time #> user system elapsed -#> 0.256 0.000 0.257 +#> 0.256 0.000 0.256 #> #> $mkinmod #> <mkinmod> model generated with @@ -378,7 +378,7 @@ #> } #> return(mC) #> } -#> <environment: 0x27fc328> +#> <environment: 0x435ac28> #> #> $cost_notrans #> function (P) @@ -400,7 +400,7 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <environment: 0x27fc328> +#> <environment: 0x435ac28> #> #> $hessian_notrans #> parent_0 alpha beta @@ -466,7 +466,7 @@ #> 99.66619 #> #> $date -#> [1] "Thu Oct 6 09:17:52 2016" +#> [1] "Thu Oct 6 09:39:06 2016" #> #> attr(,"class") #> [1] "mkinfit" "modFit" @@ -734,7 +734,7 @@ #> } #> return(mC) #> } -#> <environment: 0x2e966b0> +#> <environment: 0x4da08d0> #> #> $cost_notrans #> function (P) @@ -756,7 +756,7 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <environment: 0x2e966b0> +#> <environment: 0x4da08d0> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -819,7 +819,7 @@ #> 99.17407 #> #> $date -#> [1] "Thu Oct 6 09:17:51 2016" +#> [1] "Thu Oct 6 09:39:06 2016" #> #> attr(,"class") #> [1] "mkinfit" "modFit" @@ -1083,7 +1083,7 @@ #> } #> return(mC) #> } -#> <environment: 0x2e966b0> +#> <environment: 0x4da08d0> #> #> $cost_notrans #> function (P) @@ -1105,7 +1105,7 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <environment: 0x2e966b0> +#> <environment: 0x4da08d0> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -1168,7 +1168,7 @@ #> 99.17407 #> #> $date -#> [1] "Thu Oct 6 09:17:51 2016" +#> [1] "Thu Oct 6 09:39:06 2016" #> #> attr(,"class") #> [1] "mkinfit" "modFit" diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index edfce55a..17e900a4 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -122,8 +122,8 @@ fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE)
#> mkin version: 0.9.44.9000 #> R version: 3.3.1 -#> Date of fit: Thu Oct 6 09:17:57 2016 -#> Date of summary: Thu Oct 6 09:17:57 2016 +#> Date of fit: Thu Oct 6 09:39:12 2016 +#> Date of summary: Thu Oct 6 09:39:12 2016 #> #> Equations: #> d_T245 = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -133,7 +133,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 246 model solutions performed in 1.508 s +#> Fitted with method Port using 246 model solutions performed in 1.544 s #> #> Weighting: none #> diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index d1441f8b..14c1b364 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -363,15 +363,15 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version: 0.9.44.9000 #> R version: 3.3.1 -#> Date of fit: Thu Oct 6 09:17:59 2016 -#> Date of summary: Thu Oct 6 09:17:59 2016 +#> Date of fit: Thu Oct 6 09:39:14 2016 +#> Date of summary: Thu Oct 6 09:39:14 2016 #> #> Equations: #> d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.153 s +#> Fitted with method Port using 64 model solutions performed in 0.16 s #> #> Weighting: none #> @@ -441,7 +441,7 @@ m1 = mkinsub("SFO"))
Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> user system elapsed -#> 1.252 1.176 0.914 +#> 1.204 1.224 0.917 #>
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750 #>
endpoints(fit)
#> $ff diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index 730792c1..b0899a3e 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -284,7 +284,7 @@ solution_type = "eigen")[201,]))
#> time parent m1 #> 201 20 4.978707 27.46227 #>
#> user system elapsed -#> 0.000 0.028 0.004 +#> 0.008 0.024 0.004 #>
system.time( print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), @@ -298,7 +298,7 @@ solution_type = "deSolve", use_compiled = FALSE)[201,]))
#> time parent m1 #> 201 20 4.978707 27.46227 #>
#> user system elapsed -#> 0.036 0.000 0.035 +#> 0.032 0.000 0.033 #>
diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index e0cdfe23..001852a5 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -142,15 +142,15 @@

Examples

  summary(mkinfit(mkinmod(parent = list(type = "SFO")), FOCUS_2006_A, quiet = TRUE))
#> mkin version:    0.9.44.9000 
 #> R version:       3.3.1 
-#> Date of fit:     Thu Oct  6 09:18:07 2016 
-#> Date of summary: Thu Oct  6 09:18:07 2016 
+#> Date of fit:     Thu Oct  6 09:39:22 2016 
+#> Date of summary: Thu Oct  6 09:39:22 2016 
 #> 
 #> Equations:
 #> d_parent = - k_parent_sink * parent
 #> 
 #> Model predictions using solution type analytical 
 #> 
-#> Fitted with method Port using 35 model solutions performed in 0.079 s
+#> Fitted with method Port using 35 model solutions performed in 0.078 s
 #> 
 #> Weighting: none
 #> 
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index 3b8be856..2b736098 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -147,8 +147,8 @@
 fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
 summary(fit, data=FALSE) # See transformed and backtransformed parameters
#> mkin version:    0.9.44.9000 
 #> R version:       3.3.1 
-#> Date of fit:     Thu Oct  6 09:18:08 2016 
-#> Date of summary: Thu Oct  6 09:18:08 2016 
+#> Date of fit:     Thu Oct  6 09:39:23 2016 
+#> Date of summary: Thu Oct  6 09:39:23 2016 
 #> 
 #> Equations:
 #> d_parent = - k_parent_sink * parent - k_parent_m1 * parent
@@ -156,7 +156,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 153 model solutions performed in 0.636 s
+#> Fitted with method Port using 153 model solutions performed in 0.63 s
 #> 
 #> Weighting: none
 #> 
-- 
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