From bad2f70c18cd9f57c0d382914327613bcfc9298f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 29 Jul 2024 08:06:08 +0200 Subject: Move coverage to pkgdown docs The coverage report is neither successful on Travis nor in the github workflow set up with the usethis package. Therefore the code coverage report is generated locally and linked into the pkgdown docs. --- docs/reference/BIC.mmkin.html | 8 + docs/reference/FOCUS_2006_A.html | 8 + docs/reference/FOCUS_2006_B.html | 8 + docs/reference/FOCUS_2006_C.html | 8 + docs/reference/FOCUS_2006_D.html | 8 + docs/reference/FOCUS_2006_E.html | 8 + docs/reference/FOCUS_2006_F.html | 8 + docs/reference/NAFTA_SOP_Appendix_B.html | 8 + docs/reference/NAFTA_SOP_Appendix_D.html | 8 + docs/reference/Rplot001.png | Bin 13993 -> 1011 bytes docs/reference/[.mhmkin.html | 8 + docs/reference/aw.mixed.mmkin.html | 8 + docs/reference/aw.mkinfit.html | 8 + docs/reference/aw.mmkin.html | 8 + docs/reference/aw.multistart.html | 8 + docs/reference/backtransform_odeparms.html | 8 + docs/reference/best.default.html | 8 + docs/reference/best.html | 8 + docs/reference/check_failed.html | 100 +++ docs/reference/ds_dfop.html | 8 + docs/reference/ds_dfop_sfo.html | 8 + docs/reference/ds_fomc.html | 8 + docs/reference/ds_hs.html | 8 + docs/reference/ds_sfo.html | 8 + docs/reference/f_time_norm_focus.mkindsg.html | 8 + docs/reference/f_time_norm_focus.numeric.html | 8 + docs/reference/hierarchical_kinetics.html | 125 ++-- docs/reference/html_listing.html | 8 + docs/reference/illparms.mhmkin.html | 8 + docs/reference/illparms.mkinfit.html | 8 + docs/reference/illparms.mmkin.html | 8 + docs/reference/illparms.saem.mmkin.html | 8 + docs/reference/index.html | 725 ++++++++++++---------- docs/reference/intervals.html | 8 + docs/reference/invilr.html | 8 + docs/reference/loftest.mkinfit.html | 8 + docs/reference/lrtest.html | 8 + docs/reference/lrtest.mmkin.html | 8 + docs/reference/max_twa_dfop.html | 8 + docs/reference/max_twa_fomc.html | 8 + docs/reference/max_twa_hs.html | 8 + docs/reference/max_twa_sfo.html | 8 + docs/reference/mhmkin.list.html | 8 + docs/reference/mhmkin.mmkin.html | 8 + docs/reference/mixed.mmkin.html | 8 + docs/reference/mkinpredict.mkinfit.html | 8 + docs/reference/mkinpredict.mkinmod.html | 8 + docs/reference/mkinsub.html | 234 +------ docs/reference/multistart.saem.mmkin.html | 8 + docs/reference/nlme_data.html | 8 + docs/reference/parms.mkinfit.html | 8 + docs/reference/parms.mmkin.html | 8 + docs/reference/parms.multistart.html | 8 + docs/reference/parms.saem.mmkin.html | 8 + docs/reference/parplot.multistart.saem.mmkin.html | 8 + docs/reference/plot_err.html | 8 + docs/reference/plot_res.html | 8 + docs/reference/plot_sep.html | 8 + docs/reference/print.illparms.mhmkin.html | 8 + docs/reference/print.illparms.mkinfit.html | 8 + docs/reference/print.illparms.mmkin.html | 8 + docs/reference/print.illparms.saem.mmkin.html | 8 + docs/reference/print.mhmkin.html | 8 + docs/reference/print.mixed.mmkin.html | 8 + docs/reference/print.mkinds.html | 194 +----- docs/reference/print.mkindsg.html | 8 + docs/reference/print.mkinmod.html | 214 +------ docs/reference/print.mmkin.html | 194 +----- docs/reference/print.multistart.html | 8 + docs/reference/print.nafta.html | 8 + docs/reference/print.nlme.mmkin.html | 8 + docs/reference/print.saem.mmkin.html | 8 + docs/reference/print.status.mhmkin.html | 8 + docs/reference/print.status.mmkin.html | 8 + docs/reference/print.summary.mkinfit.html | 8 + docs/reference/print.summary.mmkin.html | 8 + docs/reference/print.summary.nlme.mmkin.html | 8 + docs/reference/print.summary.saem.mmkin.html | 8 + docs/reference/saem.mmkin.html | 8 + docs/reference/saemix_data.html | 8 + docs/reference/saemix_model.html | 8 + docs/reference/schaefer07_complex_results.html | 8 + docs/reference/set_nd_nq_focus.html | 8 + docs/reference/status.mhmkin.html | 8 + docs/reference/status.mmkin.html | 8 + docs/reference/tex_listing.html | 149 +---- docs/reference/update.nlme.mmkin.html | 8 + docs/reference/which.best.default.html | 8 + docs/reference/which.best.html | 8 + 89 files changed, 1219 insertions(+), 1356 deletions(-) create mode 100644 docs/reference/BIC.mmkin.html create mode 100644 docs/reference/FOCUS_2006_A.html create mode 100644 docs/reference/FOCUS_2006_B.html create mode 100644 docs/reference/FOCUS_2006_C.html create mode 100644 docs/reference/FOCUS_2006_D.html create mode 100644 docs/reference/FOCUS_2006_E.html create mode 100644 docs/reference/FOCUS_2006_F.html create mode 100644 docs/reference/NAFTA_SOP_Appendix_B.html create mode 100644 docs/reference/NAFTA_SOP_Appendix_D.html create mode 100644 docs/reference/[.mhmkin.html create mode 100644 docs/reference/aw.mixed.mmkin.html create mode 100644 docs/reference/aw.mkinfit.html create mode 100644 docs/reference/aw.mmkin.html create mode 100644 docs/reference/aw.multistart.html create mode 100644 docs/reference/backtransform_odeparms.html create mode 100644 docs/reference/best.default.html create mode 100644 docs/reference/best.html create mode 100644 docs/reference/check_failed.html create mode 100644 docs/reference/ds_dfop.html create mode 100644 docs/reference/ds_dfop_sfo.html create mode 100644 docs/reference/ds_fomc.html create mode 100644 docs/reference/ds_hs.html create mode 100644 docs/reference/ds_sfo.html create mode 100644 docs/reference/f_time_norm_focus.mkindsg.html create mode 100644 docs/reference/f_time_norm_focus.numeric.html create mode 100644 docs/reference/html_listing.html create mode 100644 docs/reference/illparms.mhmkin.html create mode 100644 docs/reference/illparms.mkinfit.html create mode 100644 docs/reference/illparms.mmkin.html create mode 100644 docs/reference/illparms.saem.mmkin.html create mode 100644 docs/reference/intervals.html create mode 100644 docs/reference/invilr.html create mode 100644 docs/reference/loftest.mkinfit.html create mode 100644 docs/reference/lrtest.html create mode 100644 docs/reference/lrtest.mmkin.html create mode 100644 docs/reference/max_twa_dfop.html create mode 100644 docs/reference/max_twa_fomc.html create mode 100644 docs/reference/max_twa_hs.html create mode 100644 docs/reference/max_twa_sfo.html create mode 100644 docs/reference/mhmkin.list.html create mode 100644 docs/reference/mhmkin.mmkin.html create mode 100644 docs/reference/mixed.mmkin.html create mode 100644 docs/reference/mkinpredict.mkinfit.html create mode 100644 docs/reference/mkinpredict.mkinmod.html create mode 100644 docs/reference/multistart.saem.mmkin.html create mode 100644 docs/reference/nlme_data.html create mode 100644 docs/reference/parms.mkinfit.html create mode 100644 docs/reference/parms.mmkin.html create mode 100644 docs/reference/parms.multistart.html create mode 100644 docs/reference/parms.saem.mmkin.html create mode 100644 docs/reference/parplot.multistart.saem.mmkin.html create mode 100644 docs/reference/plot_err.html create mode 100644 docs/reference/plot_res.html create mode 100644 docs/reference/plot_sep.html create mode 100644 docs/reference/print.illparms.mhmkin.html create mode 100644 docs/reference/print.illparms.mkinfit.html create mode 100644 docs/reference/print.illparms.mmkin.html create mode 100644 docs/reference/print.illparms.saem.mmkin.html create mode 100644 docs/reference/print.mhmkin.html create mode 100644 docs/reference/print.mixed.mmkin.html create mode 100644 docs/reference/print.mkindsg.html create mode 100644 docs/reference/print.multistart.html create mode 100644 docs/reference/print.nafta.html create mode 100644 docs/reference/print.nlme.mmkin.html create mode 100644 docs/reference/print.saem.mmkin.html create mode 100644 docs/reference/print.status.mhmkin.html create mode 100644 docs/reference/print.status.mmkin.html create mode 100644 docs/reference/print.summary.mkinfit.html create mode 100644 docs/reference/print.summary.mmkin.html create mode 100644 docs/reference/print.summary.nlme.mmkin.html create mode 100644 docs/reference/print.summary.saem.mmkin.html create mode 100644 docs/reference/saem.mmkin.html create mode 100644 docs/reference/saemix_data.html create mode 100644 docs/reference/saemix_model.html create mode 100644 docs/reference/schaefer07_complex_results.html create mode 100644 docs/reference/set_nd_nq_focus.html create mode 100644 docs/reference/status.mhmkin.html create mode 100644 docs/reference/status.mmkin.html create mode 100644 docs/reference/update.nlme.mmkin.html create mode 100644 docs/reference/which.best.default.html create mode 100644 docs/reference/which.best.html (limited to 'docs/reference') diff --git a/docs/reference/BIC.mmkin.html b/docs/reference/BIC.mmkin.html new file mode 100644 index 00000000..191b50a5 --- /dev/null +++ b/docs/reference/BIC.mmkin.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_A.html b/docs/reference/FOCUS_2006_A.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_A.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_B.html b/docs/reference/FOCUS_2006_B.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_B.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_C.html b/docs/reference/FOCUS_2006_C.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_C.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_D.html b/docs/reference/FOCUS_2006_D.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_D.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_E.html b/docs/reference/FOCUS_2006_E.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_E.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/FOCUS_2006_F.html b/docs/reference/FOCUS_2006_F.html new file mode 100644 index 00000000..76954866 --- /dev/null +++ b/docs/reference/FOCUS_2006_F.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/NAFTA_SOP_Appendix_B.html b/docs/reference/NAFTA_SOP_Appendix_B.html new file mode 100644 index 00000000..0ba2fb91 --- /dev/null +++ b/docs/reference/NAFTA_SOP_Appendix_B.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/NAFTA_SOP_Appendix_D.html b/docs/reference/NAFTA_SOP_Appendix_D.html new file mode 100644 index 00000000..0ba2fb91 --- /dev/null +++ b/docs/reference/NAFTA_SOP_Appendix_D.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png index 5de2bdc7..17a35806 100644 Binary files a/docs/reference/Rplot001.png and b/docs/reference/Rplot001.png differ diff --git a/docs/reference/[.mhmkin.html b/docs/reference/[.mhmkin.html new file mode 100644 index 00000000..4be1ad9e --- /dev/null +++ b/docs/reference/[.mhmkin.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/aw.mixed.mmkin.html b/docs/reference/aw.mixed.mmkin.html new file mode 100644 index 00000000..9e9a4d03 --- /dev/null +++ b/docs/reference/aw.mixed.mmkin.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/aw.mkinfit.html b/docs/reference/aw.mkinfit.html new file mode 100644 index 00000000..9e9a4d03 --- /dev/null +++ b/docs/reference/aw.mkinfit.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/aw.mmkin.html b/docs/reference/aw.mmkin.html new file mode 100644 index 00000000..9e9a4d03 --- /dev/null +++ b/docs/reference/aw.mmkin.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/aw.multistart.html b/docs/reference/aw.multistart.html new file mode 100644 index 00000000..9e9a4d03 --- /dev/null +++ b/docs/reference/aw.multistart.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/backtransform_odeparms.html b/docs/reference/backtransform_odeparms.html new file mode 100644 index 00000000..6cbb805d --- /dev/null +++ b/docs/reference/backtransform_odeparms.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/best.default.html b/docs/reference/best.default.html new file mode 100644 index 00000000..9700ef05 --- /dev/null +++ b/docs/reference/best.default.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/best.html b/docs/reference/best.html new file mode 100644 index 00000000..9700ef05 --- /dev/null +++ b/docs/reference/best.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/check_failed.html b/docs/reference/check_failed.html new file mode 100644 index 00000000..516e4967 --- /dev/null +++ b/docs/reference/check_failed.html @@ -0,0 +1,100 @@ + +Check if fit within an mhmkin object failed — check_failed • mkin + Skip to contents + + +
+
+
+ +

Check if fit within an mhmkin object failed

+ Source: R/mhmkin.R +
check_failed.Rd
+
+ +
+

Check if fit within an mhmkin object failed

+
+ +
+

Usage

+ 
check_failed(x)
+
+ +
+

Arguments

+ + +
x
+

The object to be checked

+ +
+ +
+ + +
+

Developed by Johannes Ranke.

+
+ +
+

Site built with pkgdown 2.1.0.

+
+ +
+ + + + + + + diff --git a/docs/reference/ds_dfop.html b/docs/reference/ds_dfop.html new file mode 100644 index 00000000..6b8c7d09 --- /dev/null +++ b/docs/reference/ds_dfop.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/ds_dfop_sfo.html b/docs/reference/ds_dfop_sfo.html new file mode 100644 index 00000000..6b8c7d09 --- /dev/null +++ b/docs/reference/ds_dfop_sfo.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/ds_fomc.html b/docs/reference/ds_fomc.html new file mode 100644 index 00000000..6b8c7d09 --- /dev/null +++ b/docs/reference/ds_fomc.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/ds_hs.html b/docs/reference/ds_hs.html new file mode 100644 index 00000000..6b8c7d09 --- /dev/null +++ b/docs/reference/ds_hs.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/ds_sfo.html b/docs/reference/ds_sfo.html new file mode 100644 index 00000000..6b8c7d09 --- /dev/null +++ b/docs/reference/ds_sfo.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/f_time_norm_focus.mkindsg.html b/docs/reference/f_time_norm_focus.mkindsg.html new file mode 100644 index 00000000..f6530f49 --- /dev/null +++ b/docs/reference/f_time_norm_focus.mkindsg.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/f_time_norm_focus.numeric.html b/docs/reference/f_time_norm_focus.numeric.html new file mode 100644 index 00000000..f6530f49 --- /dev/null +++ b/docs/reference/f_time_norm_focus.numeric.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/docs/reference/hierarchical_kinetics.html b/docs/reference/hierarchical_kinetics.html index 5cc24e79..b44a6c99 100644 --- a/docs/reference/hierarchical_kinetics.html +++ b/docs/reference/hierarchical_kinetics.html @@ -1,88 +1,75 @@ -Hierarchical kinetics template — hierarchical_kinetics • mkin +includes them.'> Skip to contents - -