From e1ccb85d60802be5e4848ceec0637483753ad8c3 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 6 Sep 2018 13:38:06 +0200 Subject: Fixed publication date in NEWS, docs rebuilt --- docs/reference/Extract.mmkin.html | 12 ++++++------ docs/reference/mccall81_245T.html | 6 +++--- docs/reference/mkinfit.html | 8 ++++---- docs/reference/mkinpredict.html | 4 ++-- docs/reference/summary.mkinfit.html | 6 +++--- docs/reference/transform_odeparms.html | 6 +++--- 6 files changed, 21 insertions(+), 21 deletions(-) (limited to 'docs/reference') diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index 982363a1..8771b53b 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -278,7 +278,7 @@ #> #> $time #> User System verstrichen -#> 0.183 0.000 0.184 +#> 0.171 0.001 0.171 #> #> $mkinmod #> <mkinmod> model generated with @@ -467,8 +467,8 @@ #> } #> return(mC) #> } -#> <bytecode: 0x55555bd7d1a0> -#> <environment: 0x55555bc8d4d8> +#> <bytecode: 0x55555bd7f970> +#> <environment: 0x55555bc8fca8> #> #> $cost_notrans #> function (P) @@ -490,8 +490,8 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <bytecode: 0x55555ca81b68> -#> <environment: 0x55555bc8d4d8> +#> <bytecode: 0x55555ca84338> +#> <environment: 0x55555bc8fca8> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -558,7 +558,7 @@ #> 99.17407 #> #> $date -#> [1] "Thu Sep 6 11:50:56 2018" +#> [1] "Thu Sep 6 13:35:24 2018" #> #> $version #> [1] "0.9.47.2" diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index cdfc4b5d..9894f8eb 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -166,8 +166,8 @@ fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE)
#> mkin version used for fitting: 0.9.47.2 #> R version used for fitting: 3.5.1 -#> Date of fit: Thu Sep 6 11:51:05 2018 -#> Date of summary: Thu Sep 6 11:51:05 2018 +#> Date of fit: Thu Sep 6 13:35:34 2018 +#> Date of summary: Thu Sep 6 13:35:34 2018 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -177,7 +177,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 246 model solutions performed in 1.51 s +#> Fitted with method Port using 246 model solutions performed in 1.549 s #> #> Weighting: none #> diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index e99e7d9e..f9c6c117 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -433,15 +433,15 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.47.2 #> R version used for fitting: 3.5.1 -#> Date of fit: Thu Sep 6 11:51:08 2018 -#> Date of summary: Thu Sep 6 11:51:08 2018 +#> Date of fit: Thu Sep 6 13:35:36 2018 +#> Date of summary: Thu Sep 6 13:35:36 2018 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.142 s +#> Fitted with method Port using 64 model solutions performed in 0.144 s #> #> Weighting: none #> @@ -510,7 +510,7 @@ m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> User System verstrichen -#> 0.895 0.000 0.898
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.919 0.000 0.920
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index 5e2e5449..59b67a5d 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -326,12 +326,12 @@ c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "deSolve")[201,]))
#> time parent m1 #> 201 20 4.978707 27.46227
#> User System verstrichen -#> 0.002 0.000 0.001
system.time( +#> 0.002 0.000 0.002
system.time( print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "deSolve", use_compiled = FALSE)[201,]))
#> time parent m1 #> 201 20 4.978707 27.46227
#> User System verstrichen -#> 0.035 0.000 0.034
+#> 0.037 0.000 0.038