From fe411af3dbed474d9e5b3cc1d509f66bd76f7319 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 28 Nov 2025 09:20:07 +0100 Subject: Example evaluation of D24_2014, improve docs --- docs/reference/D24_2014-1.png | Bin 0 -> 88185 bytes docs/reference/D24_2014.html | 27 ++++++++++++++++++++++++--- docs/reference/index.html | 2 +- docs/reference/mkinds.html | 12 ++++++------ docs/reference/mkindsg.html | 12 +++++++++--- docs/reference/saem.html | 39 +++++++++++---------------------------- 6 files changed, 51 insertions(+), 41 deletions(-) create mode 100644 docs/reference/D24_2014-1.png (limited to 'docs/reference') diff --git a/docs/reference/D24_2014-1.png b/docs/reference/D24_2014-1.png new file mode 100644 index 00000000..3f04f216 Binary files /dev/null and b/docs/reference/D24_2014-1.png differ diff --git a/docs/reference/D24_2014.html b/docs/reference/D24_2014.html index 2eee55fa..fed830e6 100644 --- a/docs/reference/D24_2014.html +++ b/docs/reference/D24_2014.html @@ -1,5 +1,5 @@ -Aerobic soil degradation data on 2,4-D from the EU assessment in 2014 — D24_2014 • mkinAerobic soil degradation data on 2,4-D from the EU assessment in 2014 — D24_2014 • mkin
  • Example evaluations with hierarchical models (nonlinear mixed-effects models)
  • Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P
  • Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P
    • -
  • Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione
    • +
  • Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione
  • Testing hierarchical pathway kinetics with residue data on cyantraniliprole
  • Comparison of saemix and nlme evaluations of dimethenamid data from 2018
  • Short demo of the multistart method
    • @@ -193,6 +193,27 @@ specific pieces of information in the comments.

    #> exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 #> * time))) * D24 - k_DCP * DCP #> d_DCA/dt = + f_DCP_to_DCA * k_DCP * DCP - k_DCA * DCA +D24_2014_data <- lapply(D24_2014$ds, function(x) x$data) +names(D24_2014_data) <- sapply(D24_2014$ds, function(x) x$title) +f_D24_2014 <- mmkin( + models = list( + "SFO-SFO-SFO" = m_D24, + "DFOP-SFO-SFO" = m_D24_2), + data = D24_2014_data, + quiet = TRUE) +print(f_D24_2014) +#> <mmkin> object +#> Status of individual fits: +#> +#> dataset +#> model Mississippi Fayette RefSol 03-G Site E1 Site I2 +#> SFO-SFO-SFO OK Z Z Z Z +#> DFOP-SFO-SFO OK Z Z Z Z +#> +#> Z: Observations with value of zero were removed from the data +#> OK: No warnings +plot(f_D24_2014[, 3]) + # } @@ -205,7 +226,7 @@ specific pieces of information in the comments.

    -

    Site built with pkgdown 2.1.1.

    +

    Site built with pkgdown 2.1.3.

    diff --git a/docs/reference/index.html b/docs/reference/index.html index 57af6079..ab9bbb13 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -7,7 +7,7 @@ mkin - 1.2.11 + 1.2.10