From 10f2314d12bc1e1664b1ff1db015d1df9f7fbe34 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 26 Feb 2019 21:12:21 +0100 Subject: Static documentation rebuilt by pkgdown --- docs/articles/FOCUS_D.html | 9 +++-- docs/articles/FOCUS_L.html | 39 +++++++++++---------- docs/articles/index.html | 3 ++ docs/articles/mkin.html | 3 ++ docs/articles/twa.html | 3 ++ docs/articles/web_only/FOCUS_Z.html | 3 ++ docs/articles/web_only/NAFTA_examples.html | 3 ++ docs/articles/web_only/compiled_models.html | 13 ++++--- docs/news/index.html | 3 ++ docs/reference/AIC.mmkin.html | 3 ++ docs/reference/CAKE_export.html | 3 ++ docs/reference/DFOP.solution.html | 3 ++ docs/reference/Extract.mmkin.html | 13 ++++--- docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html | 3 ++ docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html | 3 ++ docs/reference/FOCUS_2006_HS_ref_A_to_F.html | 3 ++ docs/reference/FOCUS_2006_SFO_ref_A_to_F.html | 3 ++ docs/reference/FOCUS_2006_datasets.html | 3 ++ docs/reference/FOMC.solution.html | 3 ++ docs/reference/HS.solution.html | 3 ++ docs/reference/IORE.solution.html | 3 ++ docs/reference/NAFTA_SOP_2015.html | 3 ++ docs/reference/NAFTA_SOP_Attachment.html | 5 ++- docs/reference/SFO.solution.html | 3 ++ docs/reference/SFORB.solution.html | 3 ++ docs/reference/add_err.html | 3 ++ docs/reference/endpoints.html | 3 ++ docs/reference/geometric_mean.html | 3 ++ docs/reference/ilr.html | 3 ++ docs/reference/index.html | 9 +++++ docs/reference/logLik.mkinfit.html | 3 ++ docs/reference/logistic.solution.html | 3 ++ docs/reference/max_twa_parent.html | 3 ++ docs/reference/mccall81_245T.html | 15 ++++---- docs/reference/mkin_long_to_wide.html | 3 ++ docs/reference/mkin_wide_to_long.html | 3 ++ docs/reference/mkinds.html | 3 ++ docs/reference/mkinerrmin.html | 3 ++ docs/reference/mkinfit.html | 47 ++++++++++++++------------ docs/reference/mkinmod.html | 5 ++- docs/reference/mkinparplot.html | 3 ++ docs/reference/mkinplot.html | 3 ++ docs/reference/mkinpredict.html | 7 ++-- docs/reference/mkinresplot.html | 3 ++ docs/reference/mkinsub.html | 3 ++ docs/reference/mmkin.html | 7 ++-- docs/reference/nafta.html | 3 ++ docs/reference/plot.mkinfit.html | 3 ++ docs/reference/plot.mmkin.html | 3 ++ docs/reference/plot.nafta.html | 3 ++ docs/reference/print.mkinds.html | 3 ++ docs/reference/print.mkinmod.html | 3 ++ docs/reference/print.nafta.html | 3 ++ docs/reference/schaefer07_complex_case.html | 3 ++ docs/reference/sigma_twocomp.html | 3 ++ docs/reference/summary.mkinfit.html | 7 ++-- docs/reference/synthetic_data_for_UBA.html | 3 ++ docs/reference/test_data_from_UBA_2014.html | 3 ++ docs/reference/transform_odeparms.html | 27 ++++++++------- 59 files changed, 262 insertions(+), 79 deletions(-) (limited to 'docs') diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 9030710e..e01fd46d 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -163,8 +166,8 @@ 
    summary(fit)
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:04 2019 
-## Date of summary: Tue Feb 26 20:25:04 2019 
+## Date of fit:     Tue Feb 26 21:09:15 2019 
+## Date of summary: Tue Feb 26 21:09:15 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +175,7 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.7 s
+## Fitted with method Port using 153 model solutions performed in 0.712 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index a6853c97..aeded526 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -64,6 +64,9 @@
     
  • 
       Calculation of time weighted average concentrations with mkin
     
    • 
+    
  • 
+      Example evaluation of NAFTA SOP Attachment examples
+    
    •
  • @@ -111,15 +114,15 @@ summary(m.L1.SFO) 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:06 2019 
-## Date of summary: Tue Feb 26 20:25:06 2019 
+## Date of fit:     Tue Feb 26 21:09:17 2019 
+## Date of summary: Tue Feb 26 21:09:17 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.095 s
+## Fitted with method Port using 37 model solutions performed in 0.096 s
 ## 
 ## Weighting: none
 ## 
@@ -202,15 +205,15 @@
 
    summary(m.L1.FOMC, data = FALSE)
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:08 2019 
-## Date of summary: Tue Feb 26 20:25:08 2019 
+## Date of fit:     Tue Feb 26 21:09:19 2019 
+## Date of summary: Tue Feb 26 21:09:19 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.509 s
+## Fitted with method Port using 611 model solutions performed in 1.539 s
 ## 
 ## Weighting: none
 ## 
@@ -297,15 +300,15 @@
 
    summary(m.L2.FOMC, data = FALSE)
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:08 2019 
-## Date of summary: Tue Feb 26 20:25:08 2019 
+## Date of fit:     Tue Feb 26 21:09:19 2019 
+## Date of summary: Tue Feb 26 21:09:19 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.196 s
+## Fitted with method Port using 81 model solutions performed in 0.199 s
 ## 
 ## Weighting: none
 ## 
@@ -368,8 +371,8 @@
 
    summary(m.L2.DFOP, data = FALSE)
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:09 2019 
-## Date of summary: Tue Feb 26 20:25:09 2019 
+## Date of fit:     Tue Feb 26 21:09:20 2019 
+## Date of summary: Tue Feb 26 21:09:20 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +381,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.843 s
+## Fitted with method Port using 336 model solutions performed in 0.844 s
 ## 
 ## Weighting: none
 ## 
@@ -460,8 +463,8 @@
 
    summary(mm.L3[["DFOP", 1]])
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:10 2019 
-## Date of summary: Tue Feb 26 20:25:11 2019 
+## Date of fit:     Tue Feb 26 21:09:21 2019 
+## Date of summary: Tue Feb 26 21:09:22 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -561,8 +564,8 @@
 
    summary(mm.L4[["SFO", 1]], data = FALSE)
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:11 2019 
-## Date of summary: Tue Feb 26 20:25:11 2019 
+## Date of fit:     Tue Feb 26 21:09:22 2019 
+## Date of summary: Tue Feb 26 21:09:22 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -621,8 +624,8 @@
 
    summary(mm.L4[["FOMC", 1]], data = FALSE)
    
 
    ## mkin version used for fitting:    0.9.48.1 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Tue Feb 26 20:25:11 2019 
-## Date of summary: Tue Feb 26 20:25:11 2019 
+## Date of fit:     Tue Feb 26 21:09:22 2019 
+## Date of summary: Tue Feb 26 21:09:22 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 49a501b7..9381dedb 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -94,6 +94,9 @@
     
  • 
       Calculation of time weighted average concentrations with mkin
     
    • 
+    
  • 
+      Example evaluation of NAFTA SOP Attachment examples
+    
    •
  • diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index f6e8af4d..d5d5e3bf 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/articles/twa.html b/docs/articles/twa.html index c06672f1..af8dbd4e 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index b398733b..1926662a 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html index bd202a54..cae0cd6b 100644 --- a/docs/articles/web_only/NAFTA_examples.html +++ b/docs/articles/web_only/NAFTA_examples.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 0295d844..3d49d262 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -64,6 +64,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -126,9 +129,9 @@ } 
    ## Lade nötiges Paket: rbenchmark
    ##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.318    1.000     2.317        0
-## 1 deSolve, not compiled            3  17.559    7.575    17.551        0
-## 2      Eigenvalue based            3   2.859    1.233     2.857        0
+## 3     deSolve, compiled            3   2.309    1.000     2.307        0
+## 1 deSolve, not compiled            3  17.535    7.594    17.527        0
+## 2      Eigenvalue based            3   2.846    1.233     2.844        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -157,8 +160,8 @@
 }
    ## Successfully compiled differential equation model from auto-generated C code.
    ##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.093    1.000     4.090        0
-## 1 deSolve, not compiled            3  37.258    9.103    37.241        0
+## 2     deSolve, compiled            3   4.071    1.000     4.069        0
+## 1 deSolve, not compiled            3  37.139    9.123    37.123        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0
    diff --git a/docs/news/index.html b/docs/news/index.html index a66f5bbc..c1644a00 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -94,6 +94,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/AIC.mmkin.html b/docs/reference/AIC.mmkin.html index 2a4a6de4..1224fbe6 100644 --- a/docs/reference/AIC.mmkin.html +++ b/docs/reference/AIC.mmkin.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/CAKE_export.html b/docs/reference/CAKE_export.html index 74e77339..38b8368c 100644 --- a/docs/reference/CAKE_export.html +++ b/docs/reference/CAKE_export.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/DFOP.solution.html b/docs/reference/DFOP.solution.html index 40e2a0fa..378d6eb2 100644 --- a/docs/reference/DFOP.solution.html +++ b/docs/reference/DFOP.solution.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index f10805a0..93be7412 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -469,8 +472,8 @@ #> } #> return(mC) #> } -#> <bytecode: 0x55555bb55ad0> -#> <environment: 0x55555c4dcf70> +#> <bytecode: 0x55555c80a350> +#> <environment: 0x55555b478bb8> #> #> $cost_notrans #> function (P) @@ -492,8 +495,8 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <bytecode: 0x55555c537298> -#> <environment: 0x55555c4dcf70> +#> <bytecode: 0x55555c522e40> +#> <environment: 0x55555b478bb8> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -560,7 +563,7 @@ #> 99.17407 #> #> $date -#> [1] "Tue Feb 26 20:23:09 2019" +#> [1] "Tue Feb 26 21:07:19 2019" #> #> $version #> [1] "0.9.48.1" diff --git a/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html b/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html index 9babae16..cdceeb0b 100644 --- a/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html +++ b/docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html @@ -101,6 +101,9 @@ in this fit." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html b/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html index 6e11464e..0f51b1ce 100644 --- a/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html +++ b/docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html @@ -101,6 +101,9 @@ in this fit." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/FOCUS_2006_HS_ref_A_to_F.html b/docs/reference/FOCUS_2006_HS_ref_A_to_F.html index 59219e45..e0b8d760 100644 --- a/docs/reference/FOCUS_2006_HS_ref_A_to_F.html +++ b/docs/reference/FOCUS_2006_HS_ref_A_to_F.html @@ -101,6 +101,9 @@ in this fit." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html b/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html index 67df3476..d07fb469 100644 --- a/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html +++ b/docs/reference/FOCUS_2006_SFO_ref_A_to_F.html @@ -101,6 +101,9 @@ in this fit." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/FOCUS_2006_datasets.html b/docs/reference/FOCUS_2006_datasets.html index 7d38639b..b766c88b 100644 --- a/docs/reference/FOCUS_2006_datasets.html +++ b/docs/reference/FOCUS_2006_datasets.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/FOMC.solution.html b/docs/reference/FOMC.solution.html index 43466474..8763c878 100644 --- a/docs/reference/FOMC.solution.html +++ b/docs/reference/FOMC.solution.html @@ -101,6 +101,9 @@ The form given here differs slightly from the original reference by Gustafson
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/HS.solution.html b/docs/reference/HS.solution.html index 048a24c3..940d3186 100644 --- a/docs/reference/HS.solution.html +++ b/docs/reference/HS.solution.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/IORE.solution.html b/docs/reference/IORE.solution.html index 9646461c..9a497f92 100644 --- a/docs/reference/IORE.solution.html +++ b/docs/reference/IORE.solution.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/NAFTA_SOP_2015.html b/docs/reference/NAFTA_SOP_2015.html index f4d89222..c8b97493 100644 --- a/docs/reference/NAFTA_SOP_2015.html +++ b/docs/reference/NAFTA_SOP_2015.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/NAFTA_SOP_Attachment.html b/docs/reference/NAFTA_SOP_Attachment.html index 63b47855..373da052 100644 --- a/docs/reference/NAFTA_SOP_Attachment.html +++ b/docs/reference/NAFTA_SOP_Attachment.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -133,7 +136,7 @@

    Format

    -

    Additionally, a list (NAFTA_SOP_Attachment) containing 16 datasets suitable +

    A list (NAFTA_SOP_Attachment) containing 16 datasets suitable for the evaluation with nafta

    Source

    diff --git a/docs/reference/SFO.solution.html b/docs/reference/SFO.solution.html index dd04ad1a..dea4527e 100644 --- a/docs/reference/SFO.solution.html +++ b/docs/reference/SFO.solution.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/SFORB.solution.html b/docs/reference/SFORB.solution.html index 19566257..a09f3d94 100644 --- a/docs/reference/SFORB.solution.html +++ b/docs/reference/SFORB.solution.html @@ -101,6 +101,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/add_err.html b/docs/reference/add_err.html index 40f23bee..8b6668f1 100644 --- a/docs/reference/add_err.html +++ b/docs/reference/add_err.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/endpoints.html b/docs/reference/endpoints.html index bd23c95a..4d777ce2 100644 --- a/docs/reference/endpoints.html +++ b/docs/reference/endpoints.html @@ -100,6 +100,9 @@ with the advantage that the SFORB model can also be used for metabolites." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/geometric_mean.html b/docs/reference/geometric_mean.html index e5a12b7d..f8beb987 100644 --- a/docs/reference/geometric_mean.html +++ b/docs/reference/geometric_mean.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/ilr.html b/docs/reference/ilr.html index 0ab8f0a3..02c96b92 100644 --- a/docs/reference/ilr.html +++ b/docs/reference/ilr.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/index.html b/docs/reference/index.html index 4e57fd3d..e1f149e2 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -94,6 +94,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -279,6 +282,12 @@

    Example datasets from the NAFTA SOP published 2015

    + +

    NAFTA_SOP_Attachment

    + +

    Example datasets from Attachment 1 to the NAFTA SOP published 2015

    + +

    mccall81_245T

    diff --git a/docs/reference/logLik.mkinfit.html b/docs/reference/logLik.mkinfit.html index 2f211431..229f8b04 100644 --- a/docs/reference/logLik.mkinfit.html +++ b/docs/reference/logLik.mkinfit.html @@ -114,6 +114,9 @@ In the case of iterative reweighting, the variances obtained by this
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/logistic.solution.html b/docs/reference/logistic.solution.html index a30059fe..9687d7d3 100644 --- a/docs/reference/logistic.solution.html +++ b/docs/reference/logistic.solution.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/max_twa_parent.html b/docs/reference/max_twa_parent.html index 17be80d5..f62ed5d5 100644 --- a/docs/reference/max_twa_parent.html +++ b/docs/reference/max_twa_parent.html @@ -101,6 +101,9 @@ guidance." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index 2e5f0ac2..bfb34489 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -160,8 +163,8 @@ anisole = list(type = "SFO"))
    #> Successfully compiled differential equation model from auto-generated C code.
    fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), quiet = TRUE) summary(fit.1, data = FALSE)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:32 2019 -#> Date of summary: Tue Feb 26 20:23:32 2019 +#> Date of fit: Tue Feb 26 21:07:42 2019 +#> Date of summary: Tue Feb 26 21:07:42 2019 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -171,7 +174,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 574 model solutions performed in 3.765 s +#> Fitted with method Port using 574 model solutions performed in 3.766 s #> #> Weighting: none #> @@ -249,8 +252,8 @@ fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:34 2019 -#> Date of summary: Tue Feb 26 20:23:34 2019 +#> Date of fit: Tue Feb 26 21:07:44 2019 +#> Date of summary: Tue Feb 26 21:07:44 2019 #> #> Equations: #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -260,7 +263,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 246 model solutions performed in 1.601 s +#> Fitted with method Port using 246 model solutions performed in 1.612 s #> #> Weighting: none #> diff --git a/docs/reference/mkin_long_to_wide.html b/docs/reference/mkin_long_to_wide.html index f034f955..ee781c11 100644 --- a/docs/reference/mkin_long_to_wide.html +++ b/docs/reference/mkin_long_to_wide.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkin_wide_to_long.html b/docs/reference/mkin_wide_to_long.html index e874f9bf..f2b9bef7 100644 --- a/docs/reference/mkin_wide_to_long.html +++ b/docs/reference/mkin_wide_to_long.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinds.html b/docs/reference/mkinds.html index a9362c2b..3be872e8 100644 --- a/docs/reference/mkinds.html +++ b/docs/reference/mkinds.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinerrmin.html b/docs/reference/mkinerrmin.html index 149006a5..60769486 100644 --- a/docs/reference/mkinerrmin.html +++ b/docs/reference/mkinerrmin.html @@ -98,6 +98,9 @@ chi-squared test as defined in the FOCUS kinetics report from 2006." />
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 84c0fc49..2494faf9 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -107,6 +107,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -438,8 +441,8 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:36 2019 -#> Date of summary: Tue Feb 26 20:23:36 2019 +#> Date of fit: Tue Feb 26 21:07:47 2019 +#> Date of summary: Tue Feb 26 21:07:47 2019 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -515,7 +518,7 @@ m1 = mkinsub("SFO"))
    #> Successfully compiled differential equation model from auto-generated C code.
    # Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
    #> User System verstrichen -#> 1.081 0.000 1.081
    coef(fit)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 1.111 0.000 1.112
    coef(fit)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
    endpoints(fit)
    #> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -590,7 +593,7 @@ #> Model cost at call 146 : 371.2134 #> Optimisation by method Port successfully terminated. #> User System verstrichen -#> 0.812 0.000 0.812
    coef(fit.deSolve)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.826 0.000 0.827
    coef(fit.deSolve)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
    endpoints(fit.deSolve)
    #> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -628,8 +631,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
    #> Successfully compiled differential equation model from auto-generated C code.
    f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:48 2019 -#> Date of summary: Tue Feb 26 20:23:48 2019 +#> Date of fit: Tue Feb 26 21:07:59 2019 +#> Date of summary: Tue Feb 26 21:07:59 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -637,7 +640,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 186 model solutions performed in 0.852 s +#> Fitted with method Port using 186 model solutions performed in 0.841 s #> #> Weighting: none #> @@ -745,8 +748,8 @@ #> 120 m1 33.31 28.78984 4.520e+00
    f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:51 2019 -#> Date of summary: Tue Feb 26 20:23:51 2019 +#> Date of fit: Tue Feb 26 21:08:02 2019 +#> Date of summary: Tue Feb 26 21:08:02 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -754,7 +757,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 551 model solutions performed in 2.6 s +#> Fitted with method Port using 551 model solutions performed in 2.596 s #> #> Weighting: none #> @@ -867,8 +870,8 @@ #> 120 m1 33.31 28.80898 4.501e+00 2.722
    f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:52 2019 -#> Date of summary: Tue Feb 26 20:23:52 2019 +#> Date of fit: Tue Feb 26 21:08:03 2019 +#> Date of summary: Tue Feb 26 21:08:03 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -876,7 +879,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.704 s +#> Fitted with method Port using 155 model solutions performed in 0.701 s #> #> Weighting: mean #> @@ -985,8 +988,8 @@ quiet = TRUE) summary(f.w.value)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:53 2019 -#> Date of summary: Tue Feb 26 20:23:53 2019 +#> Date of fit: Tue Feb 26 21:08:03 2019 +#> Date of summary: Tue Feb 26 21:08:03 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -994,7 +997,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.796 s +#> Fitted with method Port using 174 model solutions performed in 0.795 s #> #> Weighting: manual #> @@ -1105,8 +1108,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:54 2019 -#> Date of summary: Tue Feb 26 20:23:54 2019 +#> Date of fit: Tue Feb 26 21:08:05 2019 +#> Date of summary: Tue Feb 26 21:08:05 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1114,7 +1117,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 270 model solutions performed in 1.238 s +#> Fitted with method Port using 270 model solutions performed in 1.24 s #> #> Weighting: manual #> @@ -1223,8 +1226,8 @@ reweight.method = "obs") summary(f.w.man.irls)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:58 2019 -#> Date of summary: Tue Feb 26 20:23:58 2019 +#> Date of fit: Tue Feb 26 21:08:08 2019 +#> Date of summary: Tue Feb 26 21:08:08 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1232,7 +1235,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 692 model solutions performed in 3.182 s +#> Fitted with method Port using 692 model solutions performed in 3.192 s #> #> Weighting: manual #> diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index a6dd68c5..8c2ec38c 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -102,6 +102,9 @@ For the definition of model types and their parameters, the equations given
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -231,7 +234,7 @@ For the definition of model types and their parameters, the equations given SFO_SFO <- mkinmod( parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"), verbose = TRUE)
    #> Compilation argument: -#> /usr/lib/R/bin/R CMD SHLIB file240f6aec3e43.c 2> file240f6aec3e43.c.err.txt +#> /usr/lib/R/bin/R CMD SHLIB file3dbe7c3499b.c 2> file3dbe7c3499b.c.err.txt #> Program source: #> 1: #include <R.h> #> 2: diff --git a/docs/reference/mkinparplot.html b/docs/reference/mkinparplot.html index f0706605..e819befe 100644 --- a/docs/reference/mkinparplot.html +++ b/docs/reference/mkinparplot.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinplot.html b/docs/reference/mkinplot.html index 2eed795a..573e8e7c 100644 --- a/docs/reference/mkinplot.html +++ b/docs/reference/mkinplot.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index bab6deb8..fb4afa9a 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -325,7 +328,7 @@ c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "eigen")[201,]))
    #> time parent m1 #> 201 20 4.978707 27.46227
    #> User System verstrichen -#> 0.003 0.000 0.004
    system.time( +#> 0.004 0.000 0.003
    system.time( print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "deSolve")[201,]))
    #> time parent m1 @@ -335,7 +338,7 @@ c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "deSolve", use_compiled = FALSE)[201,]))
    #> time parent m1 #> 201 20 4.978707 27.46227
    #> User System verstrichen -#> 0.039 0.000 0.040
    +#> 0.039 0.000 0.039
    # Predict from a fitted model f <- mkinfit(SFO_SFO, FOCUS_2006_C)
    #> Model cost at call 1 : 552.5739 #> Model cost at call 3 : 552.5739 diff --git a/docs/reference/mkinresplot.html b/docs/reference/mkinresplot.html index e1ba5acb..c216d8b8 100644 --- a/docs/reference/mkinresplot.html +++ b/docs/reference/mkinresplot.html @@ -100,6 +100,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mkinsub.html b/docs/reference/mkinsub.html index 3e0bdcbd..fee17102 100644 --- a/docs/reference/mkinsub.html +++ b/docs/reference/mkinsub.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index 0078baed..44aaaa79 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -191,8 +194,8 @@ time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE)) time_default
    #> User System verstrichen -#> 0.059 0.021 6.916
    time_1
    #> User System verstrichen -#> 22.506 0.000 22.518
    +#> 0.041 0.032 6.955
    time_1
    #> User System verstrichen +#> 22.625 0.004 22.646
    endpoints(fits.0[["SFO_lin", 2]])
    #> $ff #> parent_M1 parent_sink M1_M2 M1_sink #> 0.7340480 0.2659520 0.7505686 0.2494314 diff --git a/docs/reference/nafta.html b/docs/reference/nafta.html index 9b879786..c05ce4cb 100644 --- a/docs/reference/nafta.html +++ b/docs/reference/nafta.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/plot.mkinfit.html b/docs/reference/plot.mkinfit.html index 44ac2967..7255b324 100644 --- a/docs/reference/plot.mkinfit.html +++ b/docs/reference/plot.mkinfit.html @@ -102,6 +102,9 @@ If the current plot device is a tikz device,
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/plot.mmkin.html b/docs/reference/plot.mmkin.html index dd7b619d..e1651208 100644 --- a/docs/reference/plot.mmkin.html +++ b/docs/reference/plot.mmkin.html @@ -101,6 +101,9 @@ If the current plot device is a tikz device,
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/plot.nafta.html b/docs/reference/plot.nafta.html index 7949d36c..753cbd6a 100644 --- a/docs/reference/plot.nafta.html +++ b/docs/reference/plot.nafta.html @@ -101,6 +101,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/print.mkinds.html b/docs/reference/print.mkinds.html index 1d858500..96607b02 100644 --- a/docs/reference/print.mkinds.html +++ b/docs/reference/print.mkinds.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/print.mkinmod.html b/docs/reference/print.mkinmod.html index ace71925..7e138697 100644 --- a/docs/reference/print.mkinmod.html +++ b/docs/reference/print.mkinmod.html @@ -97,6 +97,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/print.nafta.html b/docs/reference/print.nafta.html index 44f1f6e5..31bd2956 100644 --- a/docs/reference/print.nafta.html +++ b/docs/reference/print.nafta.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/schaefer07_complex_case.html b/docs/reference/schaefer07_complex_case.html index b7ba3d96..1e8a6d9e 100644 --- a/docs/reference/schaefer07_complex_case.html +++ b/docs/reference/schaefer07_complex_case.html @@ -99,6 +99,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/sigma_twocomp.html b/docs/reference/sigma_twocomp.html index f44a1c14..eca5deec 100644 --- a/docs/reference/sigma_twocomp.html +++ b/docs/reference/sigma_twocomp.html @@ -102,6 +102,9 @@ This is the error model used for example by Werner et al. (1978). The model
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html index 6ec72f80..8d9e0287 100644 --- a/docs/reference/summary.mkinfit.html +++ b/docs/reference/summary.mkinfit.html @@ -100,6 +100,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -208,8 +211,8 @@

    Examples

      summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
    #> mkin version used for fitting:    0.9.48.1 
 #> R version used for fitting:       3.5.2 
-#> Date of fit:     Tue Feb 26 20:24:50 2019 
-#> Date of summary: Tue Feb 26 20:24:50 2019 
+#> Date of fit:     Tue Feb 26 21:09:01 2019 
+#> Date of summary: Tue Feb 26 21:09:01 2019 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent
diff --git a/docs/reference/synthetic_data_for_UBA.html b/docs/reference/synthetic_data_for_UBA.html
index 6363db6f..6e36e72f 100644
--- a/docs/reference/synthetic_data_for_UBA.html
+++ b/docs/reference/synthetic_data_for_UBA.html
@@ -112,6 +112,9 @@ Compare also the code in the example section to see the degradation models." />
     
  • 
       Calculation of time weighted average concentrations with mkin
     
    • 
+    
  • 
+      Example evaluation of NAFTA SOP Attachment examples
+    
    •
  • diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html index b3ec4699..12904a1f 100644 --- a/docs/reference/test_data_from_UBA_2014.html +++ b/docs/reference/test_data_from_UBA_2014.html @@ -98,6 +98,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html index 6e65f609..115ee0ca 100644 --- a/docs/reference/transform_odeparms.html +++ b/docs/reference/transform_odeparms.html @@ -105,6 +105,9 @@ The transformation of sets of formation fractions is fragile, as it supposes
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -202,8 +205,8 @@ The transformation of sets of formation fractions is fragile, as it supposes fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) summary(fit, data=FALSE) # See transformed and backtransformed parameters
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:24:58 2019 -#> Date of summary: Tue Feb 26 20:24:58 2019 +#> Date of fit: Tue Feb 26 21:09:09 2019 +#> Date of summary: Tue Feb 26 21:09:09 2019 #> #> Equations: #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -211,7 +214,7 @@ The transformation of sets of formation fractions is fragile, as it supposes #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 153 model solutions performed in 0.707 s +#> Fitted with method Port using 153 model solutions performed in 0.709 s #> #> Weighting: none #> @@ -278,8 +281,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
    fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE) summary(fit.2, data=FALSE)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:25:00 2019 -#> Date of summary: Tue Feb 26 20:25:00 2019 +#> Date of fit: Tue Feb 26 21:09:11 2019 +#> Date of summary: Tue Feb 26 21:09:11 2019 #> #> Equations: #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -287,7 +290,7 @@ The transformation of sets of formation fractions is fragile, as it supposes #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 350 model solutions performed in 1.584 s +#> Fitted with method Port using 350 model solutions performed in 1.588 s #> #> Weighting: none #> @@ -366,8 +369,8 @@ The transformation of sets of formation fractions is fragile, as it supposes fit.ff <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(fit.ff, data = FALSE)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:25:01 2019 -#> Date of summary: Tue Feb 26 20:25:01 2019 +#> Date of fit: Tue Feb 26 21:09:12 2019 +#> Date of summary: Tue Feb 26 21:09:12 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -375,7 +378,7 @@ The transformation of sets of formation fractions is fragile, as it supposes #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 186 model solutions performed in 0.867 s +#> Fitted with method Port using 186 model solutions performed in 0.849 s #> #> Weighting: none #> @@ -450,8 +453,8 @@ The transformation of sets of formation fractions is fragile, as it supposes fit.ff.2 <- mkinfit(SFO_SFO.ff.2, FOCUS_2006_D, quiet = TRUE) summary(fit.ff.2, data = FALSE)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:25:02 2019 -#> Date of summary: Tue Feb 26 20:25:02 2019 +#> Date of fit: Tue Feb 26 21:09:13 2019 +#> Date of summary: Tue Feb 26 21:09:13 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -459,7 +462,7 @@ The transformation of sets of formation fractions is fragile, as it supposes #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 104 model solutions performed in 0.472 s +#> Fitted with method Port using 104 model solutions performed in 0.47 s #> #> Weighting: none #> -- cgit v1.2.1