From 288ee4e9cc0959d5663d5079d505c81f802b963b Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 23 Nov 2018 20:49:59 +0100 Subject: Static documentation rebuilt by pkgdown --- docs/articles/FOCUS_L.html | 38 +++++++++++++------------- docs/articles/web_only/compiled_models.html | 10 +++---- docs/reference/Extract.mmkin.html | 10 +++---- docs/reference/mccall81_245T.html | 12 ++++----- docs/reference/mkinfit.html | 42 ++++++++++++++--------------- docs/reference/mkinmod.html | 2 +- docs/reference/mkinpredict.html | 4 +-- docs/reference/mmkin.html | 4 +-- docs/reference/summary.mkinfit.html | 4 +-- docs/reference/transform_odeparms.html | 24 ++++++++--------- 10 files changed, 75 insertions(+), 75 deletions(-) (limited to 'docs') diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 37b4306f..e83664bc 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -110,15 +110,15 @@ summary(m.L1.SFO) 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:49 2018 
-## Date of summary: Fri Nov 23 19:58:49 2018 
+## Date of fit:     Fri Nov 23 20:47:25 2018 
+## Date of summary: Fri Nov 23 20:47:25 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.095 s
+## Fitted with method Port using 37 model solutions performed in 0.094 s
 ## 
 ## Weighting: none
 ## 
@@ -201,15 +201,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:51 2018 
-## Date of summary: Fri Nov 23 19:58:51 2018 
+## Date of fit:     Fri Nov 23 20:47:26 2018 
+## Date of summary: Fri Nov 23 20:47:26 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.464 s
+## Fitted with method Port using 611 model solutions performed in 1.467 s
 ## 
 ## Weighting: none
 ## 
@@ -296,15 +296,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:51 2018 
-## Date of summary: Fri Nov 23 19:58:51 2018 
+## Date of fit:     Fri Nov 23 20:47:27 2018 
+## Date of summary: Fri Nov 23 20:47:27 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.191 s
+## Fitted with method Port using 81 model solutions performed in 0.192 s
 ## 
 ## Weighting: none
 ## 
@@ -367,8 +367,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:52 2018 
-## Date of summary: Fri Nov 23 19:58:52 2018 
+## Date of fit:     Fri Nov 23 20:47:28 2018 
+## Date of summary: Fri Nov 23 20:47:28 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.824 s
+## Fitted with method Port using 336 model solutions performed in 0.822 s
 ## 
 ## Weighting: none
 ## 
@@ -459,8 +459,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:53 2018 
-## Date of summary: Fri Nov 23 19:58:54 2018 
+## Date of fit:     Fri Nov 23 20:47:29 2018 
+## Date of summary: Fri Nov 23 20:47:29 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.344 s
+## Fitted with method Port using 137 model solutions performed in 0.336 s
 ## 
 ## Weighting: none
 ## 
@@ -560,8 +560,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:54 2018 
-## Date of summary: Fri Nov 23 19:58:54 2018 
+## Date of fit:     Fri Nov 23 20:47:29 2018 
+## Date of summary: Fri Nov 23 20:47:30 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -620,8 +620,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:54 2018 
-## Date of summary: Fri Nov 23 19:58:54 2018 
+## Date of fit:     Fri Nov 23 20:47:30 2018 
+## Date of summary: Fri Nov 23 20:47:30 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 85efff61..c47425fb 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -125,9 +125,9 @@
 }

 
## Lade nötiges Paket: rbenchmark

 
##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.284    1.000     2.282        0
-## 1 deSolve, not compiled            3  17.732    7.764    17.724        0
-## 2      Eigenvalue based            3   2.812    1.231     2.809        0
+## 3     deSolve, compiled            3   2.274    1.000     2.273        0
+## 1 deSolve, not compiled            3  17.686    7.777    17.676        0
+## 2      Eigenvalue based            3   2.800    1.231     2.799        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -156,8 +156,8 @@
 }

 
## Successfully compiled differential equation model from auto-generated C code.

 
##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.029    1.000     4.026        0
-## 1 deSolve, not compiled            3  37.760    9.372    37.744        0
+## 2     deSolve, compiled            3   4.038    1.000     4.035        0
+## 1 deSolve, not compiled            3  37.805    9.362    37.788        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0

diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html
index a74a3067..a595dd0d 100644
--- a/docs/reference/Extract.mmkin.html
+++ b/docs/reference/Extract.mmkin.html
@@ -467,8 +467,8 @@
 #>     }
 #>     return(mC)
 #> }
-#> <bytecode: 0x55555be47f20>
-#> <environment: 0x55555bc31c70>
+#> <bytecode: 0x55555be3c890>
+#> <environment: 0x55555bc2f5a0>
 #> 
 #> $cost_notrans
 #> function (P) 
@@ -490,8 +490,8 @@
 #>         scaleVar = scaleVar)
 #>     return(mC)
 #> }
-#> <bytecode: 0x55555cd8de90>
-#> <environment: 0x55555bc31c70>
+#> <bytecode: 0x55555cd74468>
+#> <environment: 0x55555bc2f5a0>
 #> 
 #> $hessian_notrans
 #>                   parent_0 k_parent_sink
@@ -558,7 +558,7 @@
 #> 99.17407 
 #> 
 #> $date
-#> [1] "Fri Nov 23 19:56:59 2018"
+#> [1] "Fri Nov 23 20:45:37 2018"
 #> 
 #> $version
 #> [1] "0.9.47.6"
diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html
index 9f937a12..90a538b6 100644
--- a/docs/reference/mccall81_245T.html
+++ b/docs/reference/mccall81_245T.html
@@ -158,8 +158,8 @@
                          anisole = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
  
    fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), quiet = TRUE)
     summary(fit.1, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:18 2018 
-#> Date of summary: Fri Nov 23 19:57:18 2018 
+#> Date of fit:     Fri Nov 23 20:45:55 2018 
+#> Date of summary: Fri Nov 23 20:45:55 2018 
 #> 
 #> Equations:
 #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245
@@ -169,7 +169,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 574 model solutions performed in 3.661 s
+#> Fitted with method Port using 574 model solutions performed in 3.63 s
 #> 
 #> Weighting: none
 #> 
@@ -247,8 +247,8 @@
                    fixed_parms = "k_phenol_sink", quiet = TRUE)
     summary(fit.2, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:19 2018 
-#> Date of summary: Fri Nov 23 19:57:19 2018 
+#> Date of fit:     Fri Nov 23 20:45:57 2018 
+#> Date of summary: Fri Nov 23 20:45:57 2018 
 #> 
 #> Equations:
 #> d_T245/dt = - k_T245_sink * T245 - k_T245_phenol * T245
@@ -258,7 +258,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 246 model solutions performed in 1.549 s
+#> Fitted with method Port using 246 model solutions performed in 1.547 s
 #> 
 #> Weighting: none
 #> 
diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html
index 9bbe3900..b2e7363d 100644
--- a/docs/reference/mkinfit.html
+++ b/docs/reference/mkinfit.html
@@ -436,8 +436,8 @@
 fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE)
 summary(fit)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:22 2018 
-#> Date of summary: Fri Nov 23 19:57:22 2018 
+#> Date of fit:     Fri Nov 23 20:46:00 2018 
+#> Date of summary: Fri Nov 23 20:46:00 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -513,7 +513,7 @@
   m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults
 print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D,
                            solution_type = "eigen", quiet = TRUE)))
#>        User      System verstrichen 
-#>       0.995       0.000       0.995 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
+#>       0.978       0.000       0.978 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
 #>          99.59848          -3.03822          -2.98030          -5.24750 
endpoints(fit)
#> $ff
 #> parent_sink   parent_m1     m1_sink 
 #>    0.485524    0.514476    1.000000 
@@ -588,7 +588,7 @@
 #> Model cost at call  146 :  371.2134 
 #> Optimisation by method Port successfully terminated.
 #>        User      System verstrichen 
-#>       0.789       0.000       0.790 
coef(fit.deSolve)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
+#>       0.794       0.000       0.795 
coef(fit.deSolve)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
 #>          99.59848          -3.03822          -2.98030          -5.24750 
endpoints(fit.deSolve)
#> $ff
 #> parent_sink   parent_m1     m1_sink 
 #>    0.485524    0.514476    1.000000 
@@ -626,8 +626,8 @@
                       m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
 summary(f.noweight)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:34 2018 
-#> Date of summary: Fri Nov 23 19:57:34 2018 
+#> Date of fit:     Fri Nov 23 20:46:12 2018 
+#> Date of summary: Fri Nov 23 20:46:12 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -635,7 +635,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 186 model solutions performed in 0.825 s
+#> Fitted with method Port using 186 model solutions performed in 0.816 s
 #> 
 #> Weighting: none
 #> 
@@ -743,8 +743,8 @@
 #>   120       m1    33.31  28.78984  4.520e+00
f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE)
 summary(f.irls)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:36 2018 
-#> Date of summary: Fri Nov 23 19:57:36 2018 
+#> Date of fit:     Fri Nov 23 20:46:14 2018 
+#> Date of summary: Fri Nov 23 20:46:14 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -752,7 +752,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 551 model solutions performed in 2.528 s
+#> Fitted with method Port using 551 model solutions performed in 2.509 s
 #> 
 #> Weighting: none
 #> 
@@ -865,8 +865,8 @@
 #>   120       m1    33.31  28.80898  4.501e+00 2.722
f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE)
 summary(f.w.mean)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:37 2018 
-#> Date of summary: Fri Nov 23 19:57:37 2018 
+#> Date of fit:     Fri Nov 23 20:46:15 2018 
+#> Date of summary: Fri Nov 23 20:46:15 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -983,8 +983,8 @@
                      quiet = TRUE)
 summary(f.w.value)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:38 2018 
-#> Date of summary: Fri Nov 23 19:57:38 2018 
+#> Date of fit:     Fri Nov 23 20:46:16 2018 
+#> Date of summary: Fri Nov 23 20:46:16 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -992,7 +992,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 174 model solutions performed in 0.781 s
+#> Fitted with method Port using 174 model solutions performed in 0.789 s
 #> 
 #> Weighting: manual
 #> 
@@ -1103,8 +1103,8 @@
 f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE)
 summary(f.w.man)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:39 2018 
-#> Date of summary: Fri Nov 23 19:57:39 2018 
+#> Date of fit:     Fri Nov 23 20:46:17 2018 
+#> Date of summary: Fri Nov 23 20:46:17 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -1112,7 +1112,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 270 model solutions performed in 1.201 s
+#> Fitted with method Port using 270 model solutions performed in 1.212 s
 #> 
 #> Weighting: manual
 #> 
@@ -1221,8 +1221,8 @@
                        reweight.method = "obs")
 summary(f.w.man.irls)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:57:43 2018 
-#> Date of summary: Fri Nov 23 19:57:43 2018 
+#> Date of fit:     Fri Nov 23 20:46:21 2018 
+#> Date of summary: Fri Nov 23 20:46:21 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -1230,7 +1230,7 @@
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 692 model solutions performed in 3.087 s
+#> Fitted with method Port using 692 model solutions performed in 3.081 s
 #> 
 #> Weighting: manual
 #> 
diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html
index 3148efd8..e16a4147 100644
--- a/docs/reference/mkinmod.html
+++ b/docs/reference/mkinmod.html
@@ -229,7 +229,7 @@ For the definition of model types and their parameters, the equations given
 SFO_SFO <- mkinmod(
   parent = mkinsub("SFO", "m1"),
   m1 = mkinsub("SFO"), verbose = TRUE)
#> Compilation argument:
-#>  /usr/lib/R/bin/R CMD SHLIB file140043d42642.c 2> file140043d42642.c.err.txt 
+#>  /usr/lib/R/bin/R CMD SHLIB file32ab4b1aa093.c 2> file32ab4b1aa093.c.err.txt 
 #> Program source:
 #>   1: #include <R.h>
 #>   2: 
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html
index baa67000..9b8be306 100644
--- a/docs/reference/mkinpredict.html
+++ b/docs/reference/mkinpredict.html
@@ -323,7 +323,7 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "eigen")[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>        User      System verstrichen 
-#>       0.004       0.000       0.004 
  system.time(
+#>       0.004       0.000       0.003 
  system.time(
     print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01),
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve")[201,]))
#>     time   parent       m1
@@ -333,7 +333,7 @@
                 c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve", use_compiled = FALSE)[201,]))
#>     time   parent       m1
 #> 201   20 4.978707 27.46227
#>        User      System verstrichen 
-#>       0.039       0.000       0.040 

+#>       0.047       0.000       0.047 

   
    # Predict from a fitted model
     f <- mkinfit(SFO_SFO, FOCUS_2006_C)
#> Model cost at call  1 :  552.5739 
 #> Model cost at call  3 :  552.5739 
diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html
index 8bc7b18c..fda9ba60 100644
--- a/docs/reference/mmkin.html
+++ b/docs/reference/mmkin.html
@@ -189,8 +189,8 @@
 time_1 <- system.time(fits.4 <- mmkin(models, datasets, cores = 1, quiet = TRUE))
 
 time_default
#>        User      System verstrichen 
-#>       0.029       0.039       6.854 
time_1
#>        User      System verstrichen 
-#>      22.091       0.000      22.106 

+#>       0.033       0.040       6.952 
time_1
#>        User      System verstrichen 
+#>      21.739       0.000      21.752 

 endpoints(fits.0[["SFO_lin", 2]])
#> $ff
 #>   parent_M1 parent_sink       M1_M2     M1_sink 
 #>   0.7340480   0.2659520   0.7505686   0.2494314 
diff --git a/docs/reference/summary.mkinfit.html b/docs/reference/summary.mkinfit.html
index 9428f187..a0ef5efe 100644
--- a/docs/reference/summary.mkinfit.html
+++ b/docs/reference/summary.mkinfit.html
@@ -206,8 +206,8 @@
     
Examples

     
  summary(mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE))
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:58:33 2018 
-#> Date of summary: Fri Nov 23 19:58:33 2018 
+#> Date of fit:     Fri Nov 23 20:47:10 2018 
+#> Date of summary: Fri Nov 23 20:47:10 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index aa82269a..f98580cb 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -200,8 +200,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
 summary(fit, data=FALSE) # See transformed and backtransformed parameters
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:58:40 2018 
-#> Date of summary: Fri Nov 23 19:58:40 2018 
+#> Date of fit:     Fri Nov 23 20:47:18 2018 
+#> Date of summary: Fri Nov 23 20:47:18 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -209,7 +209,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 153 model solutions performed in 0.688 s
+#> Fitted with method Port using 153 model solutions performed in 0.666 s
 #> 
 #> Weighting: none
 #> 
@@ -276,8 +276,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 
fit.2 <- mkinfit(SFO_SFO, FOCUS_2006_D, transform_rates = FALSE, quiet = TRUE)
 summary(fit.2, data=FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:58:42 2018 
-#> Date of summary: Fri Nov 23 19:58:42 2018 
+#> Date of fit:     Fri Nov 23 20:47:20 2018 
+#> Date of summary: Fri Nov 23 20:47:20 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -285,7 +285,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 350 model solutions performed in 1.608 s
+#> Fitted with method Port using 350 model solutions performed in 1.539 s
 #> 
 #> Weighting: none
 #> 
@@ -364,8 +364,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit.ff <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
 summary(fit.ff, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:58:43 2018 
-#> Date of summary: Fri Nov 23 19:58:43 2018 
+#> Date of fit:     Fri Nov 23 20:47:21 2018 
+#> Date of summary: Fri Nov 23 20:47:21 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -373,7 +373,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 186 model solutions performed in 0.821 s
+#> Fitted with method Port using 186 model solutions performed in 0.824 s
 #> 
 #> Weighting: none
 #> 
@@ -448,8 +448,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
 fit.ff.2 <- mkinfit(SFO_SFO.ff.2, FOCUS_2006_D, quiet = TRUE)
 summary(fit.ff.2, data = FALSE)
#> mkin version used for fitting:    0.9.47.6 
 #> R version used for fitting:       3.5.1 
-#> Date of fit:     Fri Nov 23 19:58:44 2018 
-#> Date of summary: Fri Nov 23 19:58:44 2018 
+#> Date of fit:     Fri Nov 23 20:47:22 2018 
+#> Date of summary: Fri Nov 23 20:47:22 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - k_parent * parent
@@ -457,7 +457,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #> 
 #> Model predictions using solution type deSolve 
 #> 
-#> Fitted with method Port using 104 model solutions performed in 0.46 s
+#> Fitted with method Port using 104 model solutions performed in 0.458 s
 #> 
 #> Weighting: none
 #> 
-- 
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