From 606ef9ad6cae0ddfae6db6b90deb03f81140e46f Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 10 Nov 2020 05:14:57 +0100
Subject: Digits for summary methods, print.saem.mmkin

---
 docs/dev/news/index.html           |  3 +-
 docs/dev/pkgdown.yml               |  2 +-
 docs/dev/reference/index.html      |  2 +-
 docs/dev/reference/nlme.mmkin.html | 35 +++++++-------
 docs/dev/reference/saem.html       | 95 +++++++++++++++++++++-----------------
 5 files changed, 76 insertions(+), 61 deletions(-)

(limited to 'docs')

diff --git a/docs/dev/news/index.html b/docs/dev/news/index.html
index c068b8a4..3a868426 100644
--- a/docs/dev/news/index.html
+++ b/docs/dev/news/index.html
@@ -146,7 +146,8 @@
 <a href="#mkin-0-9-50-4-unreleased" class="anchor"></a>mkin 0.9.50.4 (unreleased)<small> Unreleased </small>
 </h1>
 <ul>
-<li><p>‘saem’ generic function to fit saemix models, with a generator ‘saem.mmkin’ and further methods ‘summary.saem.mmkin’, ‘plot.saem.mmkin’</p></li>
+<li><p>‘plot.mixed.mmkin’ method used for ‘nlme.mmkin’ and ‘saem.mmkin’, both inheriting from ‘mixed.mmkin’ (currently virtual)</p></li>
+<li><p>‘saem’ generic function to fit saemix models, with a generator ‘saem.mmkin’, summary and plot methods</p></li>
 <li><p>‘transform_odeparms’, ‘backtransform_odeparms’: Use logit transformation for solitary fractions like the g parameter of the DFOP model, or formation fractions for a pathway to only one target variable</p></li>
 <li><p>‘update’ method for ‘mmkin’ objects</p></li>
 <li><p>‘plot’, ‘summary’ and ‘print’ methods for ‘nlme.mmkin’ objects</p></li>
diff --git a/docs/dev/pkgdown.yml b/docs/dev/pkgdown.yml
index ef9bb681..17d7c266 100644
--- a/docs/dev/pkgdown.yml
+++ b/docs/dev/pkgdown.yml
@@ -10,7 +10,7 @@ articles:
   web_only/NAFTA_examples: NAFTA_examples.html
   web_only/benchmarks: benchmarks.html
   web_only/compiled_models: compiled_models.html
-last_built: 2020-11-09T16:21Z
+last_built: 2020-11-10T04:11Z
 urls:
   reference: https://pkgdown.jrwb.de/mkin/reference
   article: https://pkgdown.jrwb.de/mkin/articles
diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html
index ada9fb24..36c10225 100644
--- a/docs/dev/reference/index.html
+++ b/docs/dev/reference/index.html
@@ -325,7 +325,7 @@ of an mmkin object</p></td>
       </tr><tr>
         
         <td>
-          <p><code><a href="saem.html">saem()</a></code> <code><a href="saem.html">saemix_model()</a></code> <code><a href="saem.html">saemix_data()</a></code> </p>
+          <p><code><a href="saem.html">saem()</a></code> <code><a href="saem.html">print(<i>&lt;saem.mmkin&gt;</i>)</a></code> <code><a href="saem.html">saemix_model()</a></code> <code><a href="saem.html">saemix_data()</a></code> </p>
         </td>
         <td><p>Fit nonlinear mixed models with SAEM</p></td>
       </tr><tr>
diff --git a/docs/dev/reference/nlme.mmkin.html b/docs/dev/reference/nlme.mmkin.html
index defef75d..05edbde5 100644
--- a/docs/dev/reference/nlme.mmkin.html
+++ b/docs/dev/reference/nlme.mmkin.html
@@ -170,7 +170,7 @@ have been obtained by fitting the same model to a list of datasets.</p>
 <span class='op'>)</span>
 
 <span class='co'># S3 method for nlme.mmkin</span>
-<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, <span class='va'>...</span><span class='op'>)</span>
+<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, digits <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Extremes.html'>max</a></span><span class='op'>(</span><span class='fl'>3</span>, <span class='fu'><a href='https://rdrr.io/r/base/options.html'>getOption</a></span><span class='op'>(</span><span class='st'>"digits"</span><span class='op'>)</span> <span class='op'>-</span> <span class='fl'>3</span><span class='op'>)</span>, <span class='va'>...</span><span class='op'>)</span>
 
 <span class='co'># S3 method for nlme.mmkin</span>
 <span class='fu'><a href='https://rdrr.io/r/stats/update.html'>update</a></span><span class='op'>(</span><span class='va'>object</span>, <span class='va'>...</span><span class='op'>)</span></pre>
@@ -241,6 +241,10 @@ parameters taken from the mmkin object are used</p></td>
       <th>x</th>
       <td><p>An nlme.mmkin object to print</p></td>
     </tr>
+    <tr>
+      <th>digits</th>
+      <td><p>Number of digits to use for printing</p></td>
+    </tr>
     <tr>
       <th>...</th>
       <td><p>Update specifications passed to update.nlme</p></td>
@@ -262,8 +266,7 @@ methods that will automatically work on 'nlme.mmkin' objects, such as
 <code><a href='https://rdrr.io/pkg/nlme/man/intervals.html'>nlme::intervals()</a></code>, <code><a href='https://rdrr.io/pkg/nlme/man/anova.lme.html'>nlme::anova.lme()</a></code> and <code><a href='https://rdrr.io/pkg/nlme/man/coef.lme.html'>nlme::coef.lme()</a></code>.</p>
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <div class='dont-index'><p><code><a href='nlme_function.html'>nlme_function()</a></code>, <a href='plot.mixed.mmkin.html'>plot.mixed.mmkin</a>, <a href='summary.nlme.mmkin.html'>summary.nlme.mmkin</a>,
-parms.nlme.mmkin</p></div>
+    <div class='dont-index'><p><code><a href='nlme_function.html'>nlme_function()</a></code>, <a href='plot.mixed.mmkin.html'>plot.mixed.mmkin</a>, <a href='summary.nlme.mmkin.html'>summary.nlme.mmkin</a></p></div>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
     <pre class="examples"><div class='input'><span class='va'>ds</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
@@ -290,15 +293,15 @@ parms.nlme.mmkin</p></div>
 #&gt; 
 #&gt; Fixed effects:
 #&gt;  list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1) 
-#&gt;    parent_0      log_k1      log_k2    g_qlogis 
-#&gt; 94.17015185 -1.80015278 -4.14738834  0.03239833 
+#&gt; parent_0   log_k1   log_k2 g_qlogis 
+#&gt;  94.1702  -1.8002  -4.1474   0.0324 
 #&gt; 
 #&gt; Random effects:
 #&gt;  Formula: list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
 #&gt;  Level: ds
 #&gt;  Structure: Diagonal
-#&gt;         parent_0    log_k1  log_k2  g_qlogis Residual
-#&gt; StdDev: 2.488249 0.8447275 1.32965 0.4651789 2.321364
+#&gt;         parent_0 log_k1 log_k2 g_qlogis Residual
+#&gt; StdDev:    2.488 0.8447   1.33   0.4652    2.321
 #&gt; </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>f_nlme_dfop</span><span class='op'>)</span>
 </div><div class='img'><img src='nlme.mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>f_nlme_dfop</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; $distimes
@@ -321,12 +324,12 @@ parms.nlme.mmkin</p></div>
 #&gt; Fixed effects:
 #&gt;  list(parent_0 ~ 1, log_k_parent ~ 1) 
 #&gt;     parent_0 log_k_parent 
-#&gt;    75.933480    -3.555983 
+#&gt;       75.933       -3.556 
 #&gt; 
 #&gt; Random effects:
 #&gt;  Formula: parent_0 ~ 1 | ds
-#&gt;            parent_0 Residual
-#&gt; StdDev: 0.002416792 21.63027
+#&gt;         parent_0 Residual
+#&gt; StdDev: 0.002417    21.63
 #&gt; </div><div class='input'>  <span class='va'>ds_2</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
    <span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='va'>x</span><span class='op'>$</span><span class='va'>data</span><span class='op'>[</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"name"</span>, <span class='st'>"time"</span>, <span class='st'>"value"</span><span class='op'>)</span><span class='op'>]</span><span class='op'>)</span>
   <span class='va'>m_sfo_sfo</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"A1"</span><span class='op'>)</span>,
@@ -427,15 +430,15 @@ parms.nlme.mmkin</p></div>
 #&gt; 
 #&gt; Fixed effects:
 #&gt;  list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1) 
-#&gt;    parent_0      log_k1      log_k2    g_qlogis 
-#&gt; 94.04774566 -1.82339808 -4.16715311  0.05685186 
+#&gt; parent_0   log_k1   log_k2 g_qlogis 
+#&gt; 94.04775 -1.82340 -4.16715  0.05685 
 #&gt; 
 #&gt; Random effects:
 #&gt;  Formula: list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
 #&gt;  Level: ds
 #&gt;  Structure: Diagonal
-#&gt;         parent_0    log_k1   log_k2  g_qlogis Residual
-#&gt; StdDev: 2.473881 0.8499884 1.337185 0.4659005        1
+#&gt;         parent_0 log_k1 log_k2 g_qlogis Residual
+#&gt; StdDev:    2.474   0.85  1.337   0.4659        1
 #&gt; 
 #&gt; Variance function:
 #&gt;  Structure: Constant plus proportion of variance covariate
@@ -462,14 +465,14 @@ parms.nlme.mmkin</p></div>
 #&gt; Fixed effects:
 #&gt;  list(parent_0 ~ 1, log_k_parent_sink ~ 1, log_k_parent_A1 ~ 1,      log_k_A1_sink ~ 1) 
 #&gt;          parent_0 log_k_parent_sink   log_k_parent_A1     log_k_A1_sink 
-#&gt;         87.975536         -3.669816         -4.164127         -4.645073 
+#&gt;            87.976            -3.670            -4.164            -4.645 
 #&gt; 
 #&gt; Random effects:
 #&gt;  Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1, log_k_parent_A1 ~ 1,      log_k_A1_sink ~ 1)
 #&gt;  Level: ds
 #&gt;  Structure: Diagonal
 #&gt;         parent_0 log_k_parent_sink log_k_parent_A1 log_k_A1_sink Residual
-#&gt; StdDev: 3.992214           1.77702        1.054733     0.4821383 6.482585
+#&gt; StdDev:    3.992             1.777           1.055        0.4821    6.483
 #&gt; 
 #&gt; Variance function:
 #&gt;  Structure: Different standard deviations per stratum
diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html
index f1b4c421..f9cdf1c8 100644
--- a/docs/dev/reference/saem.html
+++ b/docs/dev/reference/saem.html
@@ -164,6 +164,9 @@ Expectation Maximisation algorithm (SAEM).</p>
   <span class='va'>...</span>
 <span class='op'>)</span>
 
+<span class='co'># S3 method for saem.mmkin</span>
+<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, digits <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Extremes.html'>max</a></span><span class='op'>(</span><span class='fl'>3</span>, <span class='fu'><a href='https://rdrr.io/r/base/options.html'>getOption</a></span><span class='op'>(</span><span class='st'>"digits"</span><span class='op'>)</span> <span class='op'>-</span> <span class='fl'>3</span><span class='op'>)</span>, <span class='va'>...</span><span class='op'>)</span>
+
 <span class='fu'>saemix_model</span><span class='op'>(</span><span class='va'>object</span>, cores <span class='op'>=</span> <span class='fl'>1</span>, verbose <span class='op'>=</span> <span class='cn'>FALSE</span>, <span class='va'>...</span><span class='op'>)</span>
 
 <span class='fu'>saemix_data</span><span class='op'>(</span><span class='va'>object</span>, verbose <span class='op'>=</span> <span class='cn'>FALSE</span>, <span class='va'>...</span><span class='op'>)</span></pre>
@@ -201,6 +204,14 @@ used.</p></td>
       <td><p>Should we suppress any plotting that is done
 by the saemix function?</p></td>
     </tr>
+    <tr>
+      <th>x</th>
+      <td><p>An saem.mmkin object to print</p></td>
+    </tr>
+    <tr>
+      <th>digits</th>
+      <td><p>Number of digits to use for printing</p></td>
+    </tr>
     </table>
 
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
@@ -230,27 +241,27 @@ using <a href='mmkin.html'>mmkin</a>.</p>
   state.ini <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='fl'>100</span><span class='op'>)</span>, fixed_initials <span class='op'>=</span> <span class='st'>"parent"</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
 <span class='va'>f_saem_p0_fixed</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent_p0_fixed</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:28 2020"
+#&gt; [1] "Tue Nov 10 05:12:21 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:30 2020"</div><div class='input'>
+#&gt; [1] "Tue Nov 10 05:12:23 2020"</div><div class='input'>
 <span class='va'>f_mmkin_parent</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mmkin.html'>mmkin</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"FOMC"</span>, <span class='st'>"DFOP"</span><span class='op'>)</span>, <span class='va'>ds</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
 <span class='va'>f_saem_sfo</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent</span><span class='op'>[</span><span class='st'>"SFO"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:31 2020"
+#&gt; [1] "Tue Nov 10 05:12:24 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:33 2020"</div><div class='input'><span class='va'>f_saem_fomc</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent</span><span class='op'>[</span><span class='st'>"FOMC"</span>, <span class='op'>]</span><span class='op'>)</span>
+#&gt; [1] "Tue Nov 10 05:12:26 2020"</div><div class='input'><span class='va'>f_saem_fomc</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent</span><span class='op'>[</span><span class='st'>"FOMC"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:33 2020"
+#&gt; [1] "Tue Nov 10 05:12:26 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:35 2020"</div><div class='input'><span class='va'>f_saem_dfop</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent</span><span class='op'>[</span><span class='st'>"DFOP"</span>, <span class='op'>]</span><span class='op'>)</span>
+#&gt; [1] "Tue Nov 10 05:12:28 2020"</div><div class='input'><span class='va'>f_saem_dfop</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent</span><span class='op'>[</span><span class='st'>"DFOP"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:36 2020"
+#&gt; [1] "Tue Nov 10 05:12:29 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:39 2020"</div><div class='input'>
+#&gt; [1] "Tue Nov 10 05:12:32 2020"</div><div class='input'>
 <span class='co'># The returned saem.mmkin object contains an SaemixObject, therefore we can use</span>
 <span class='co'># functions from saemix</span>
 <span class='kw'><a href='https://rdrr.io/r/base/library.html'>library</a></span><span class='op'>(</span><span class='va'>saemix</span><span class='op'>)</span>
@@ -296,10 +307,10 @@ using <a href='mmkin.html'>mmkin</a>.</p>
 <span class='va'>f_mmkin_parent_tc</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/stats/update.html'>update</a></span><span class='op'>(</span><span class='va'>f_mmkin_parent</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span><span class='op'>)</span>
 <span class='va'>f_saem_fomc_tc</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin_parent_tc</span><span class='op'>[</span><span class='st'>"FOMC"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:41 2020"
+#&gt; [1] "Tue Nov 10 05:12:34 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:46 2020"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/compare.saemix.html'>compare.saemix</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span><span class='op'>(</span><span class='va'>f_saem_fomc</span><span class='op'>$</span><span class='va'>so</span>, <span class='va'>f_saem_fomc_tc</span><span class='op'>$</span><span class='va'>so</span><span class='op'>)</span><span class='op'>)</span>
+#&gt; [1] "Tue Nov 10 05:12:39 2020"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/compare.saemix.html'>compare.saemix</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span><span class='op'>(</span><span class='va'>f_saem_fomc</span><span class='op'>$</span><span class='va'>so</span>, <span class='va'>f_saem_fomc_tc</span><span class='op'>$</span><span class='va'>so</span><span class='op'>)</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Likelihoods computed by importance sampling </div><div class='output co'>#&gt;        AIC      BIC
 #&gt; 1 467.7644 465.0305
 #&gt; 2 469.4862 466.3617</div><div class='input'>
@@ -319,20 +330,20 @@ using <a href='mmkin.html'>mmkin</a>.</p>
 <span class='co'># solutions written for mkin this took around four minutes</span>
 <span class='va'>f_saem_sfo_sfo</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin</span><span class='op'>[</span><span class='st'>"SFO-SFO"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:48 2020"
+#&gt; [1] "Tue Nov 10 05:12:42 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:18:53 2020"</div><div class='input'><span class='va'>f_saem_dfop_sfo</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin</span><span class='op'>[</span><span class='st'>"DFOP-SFO"</span>, <span class='op'>]</span><span class='op'>)</span>
+#&gt; [1] "Tue Nov 10 05:12:47 2020"</div><div class='input'><span class='va'>f_saem_dfop_sfo</span> <span class='op'>&lt;-</span> <span class='fu'>saem</span><span class='op'>(</span><span class='va'>f_mmkin</span><span class='op'>[</span><span class='st'>"DFOP-SFO"</span>, <span class='op'>]</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; Running main SAEM algorithm
-#&gt; [1] "Mon Nov  9 17:18:54 2020"
+#&gt; [1] "Tue Nov 10 05:12:48 2020"
 #&gt; ....
 #&gt;     Minimisation finished
-#&gt; [1] "Mon Nov  9 17:19:03 2020"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>FALSE</span><span class='op'>)</span>
+#&gt; [1] "Tue Nov 10 05:12:57 2020"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>FALSE</span><span class='op'>)</span>
 </div><div class='output co'>#&gt; saemix version used for fitting:      3.1.9000 
 #&gt; mkin version used for pre-fitting:  0.9.50.4 
 #&gt; R version used for fitting:         4.0.3 
-#&gt; Date of fit:     Mon Nov  9 17:19:04 2020 
-#&gt; Date of summary: Mon Nov  9 17:19:04 2020 
+#&gt; Date of fit:     Tue Nov 10 05:12:58 2020 
+#&gt; Date of summary: Tue Nov 10 05:12:58 2020 
 #&gt; 
 #&gt; Equations:
 #&gt; d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -347,7 +358,7 @@ using <a href='mmkin.html'>mmkin</a>.</p>
 #&gt; 
 #&gt; Model predictions using solution type analytical 
 #&gt; 
-#&gt; Fitted in 9.941 s using 300, 100 iterations
+#&gt; Fitted in 10.382 s using 300, 100 iterations
 #&gt; 
 #&gt; Variance model: Constant variance 
 #&gt; 
@@ -363,17 +374,17 @@ using <a href='mmkin.html'>mmkin</a>.</p>
 #&gt; Results:
 #&gt; 
 #&gt; Likelihood computed by importance sampling
-#&gt;        AIC      BIC    logLik
-#&gt;   841.3208 836.2435 -407.6604
+#&gt;     AIC   BIC logLik
+#&gt;   841.3 836.2 -407.7
 #&gt; 
 #&gt; Optimised, transformed parameters with symmetric confidence intervals:
-#&gt;                          est.     lower      upper
-#&gt; parent_0        93.7514328489 91.113651 96.3892150
-#&gt; log_k_A1        -6.1262333211 -8.432492 -3.8199749
-#&gt; f_parent_qlogis -0.9739851652 -1.371984 -0.5759863
-#&gt; log_k1          -2.4818388836 -3.746899 -1.2167788
-#&gt; log_k2          -3.6138616567 -5.294149 -1.9335743
-#&gt; g_qlogis        -0.0004613666 -1.063179  1.0622564
+#&gt;                       est.  lower  upper
+#&gt; parent_0        93.7514328 91.114 96.389
+#&gt; log_k_A1        -6.1262333 -8.432 -3.820
+#&gt; f_parent_qlogis -0.9739852 -1.372 -0.576
+#&gt; log_k1          -2.4818389 -3.747 -1.217
+#&gt; log_k2          -3.6138617 -5.294 -1.934
+#&gt; g_qlogis        -0.0004614 -1.063  1.062
 #&gt; 
 #&gt; Correlation: 
 #&gt;                 prnt_0 lg__A1 f_prn_ log_k1 log_k2
@@ -384,26 +395,26 @@ using <a href='mmkin.html'>mmkin</a>.</p>
 #&gt; g_qlogis        -0.068 -0.016  0.011 -0.181 -0.181
 #&gt; 
 #&gt; Random effects:
-#&gt;                         est.      lower     upper
-#&gt; SD.parent_0        2.7857084  0.7825105 4.7889063
-#&gt; SD.log_k_A1        2.1412505  0.4425207 3.8399803
-#&gt; SD.f_parent_qlogis 0.4463087  0.1609059 0.7317116
-#&gt; SD.log_k1          1.4097204  0.5240566 2.2953842
-#&gt; SD.log_k2          1.8739067  0.6979362 3.0498773
-#&gt; SD.g_qlogis        0.4559301 -0.8149852 1.7268453
+#&gt;                      est.   lower  upper
+#&gt; SD.parent_0        2.7857  0.7825 4.7889
+#&gt; SD.log_k_A1        2.1413  0.4425 3.8400
+#&gt; SD.f_parent_qlogis 0.4463  0.1609 0.7317
+#&gt; SD.log_k1          1.4097  0.5241 2.2954
+#&gt; SD.log_k2          1.8739  0.6979 3.0499
+#&gt; SD.g_qlogis        0.4559 -0.8150 1.7268
 #&gt; 
 #&gt; Variance model:
-#&gt;         est.    lower    upper
-#&gt; a.1 1.882757 1.665681 2.099832
+#&gt;      est. lower upper
+#&gt; a.1 1.883 1.666   2.1
 #&gt; 
 #&gt; Backtransformed parameters with asymmetric confidence intervals:
-#&gt;                        est.        lower       upper
-#&gt; parent_0       93.751432849 9.111365e+01 96.38921497
-#&gt; k_A1            0.002184795 2.176784e-04  0.02192835
-#&gt; f_parent_to_A1  0.274086887 2.022995e-01  0.35985666
-#&gt; k1              0.083589373 2.359079e-02  0.29618269
-#&gt; k2              0.026947583 5.020885e-03  0.14463032
-#&gt; g               0.499884658 2.567024e-01  0.74312150
+#&gt;                     est.     lower    upper
+#&gt; parent_0       93.751433 9.111e+01 96.38921
+#&gt; k_A1            0.002185 2.177e-04  0.02193
+#&gt; f_parent_to_A1  0.274087 2.023e-01  0.35986
+#&gt; k1              0.083589 2.359e-02  0.29618
+#&gt; k2              0.026948 5.021e-03  0.14463
+#&gt; g               0.499885 2.567e-01  0.74312
 #&gt; 
 #&gt; Resulting formation fractions:
 #&gt;                 ff
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