From f215080efba4097ccdaa2d1208edd36c26d7978a Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 15 Apr 2023 20:00:00 +0200
Subject: Increase test coverage

Also, using mkin analytical solutions for more than one observed
variable is not supported (but could be if out_values would be
reordered).
---
 .../hierarchical_kinetics/skeleton/skeleton.Rmd          | 16 ++++++++++++++--
 1 file changed, 14 insertions(+), 2 deletions(-)

(limited to 'inst/rmarkdown/templates/hierarchical_kinetics/skeleton')

diff --git a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
index cb328308..71d62677 100644
--- a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
+++ b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
@@ -15,7 +15,6 @@ library(mkin)
 library(knitr)
 library(saemix)
 library(parallel)
-library(readxl)
 ```
 
 ```{r n_cores, cache = FALSE}
@@ -186,6 +185,13 @@ illparms(parent_best_pH_2)
 parms(parent_best_pH_2, ci = TRUE) |> kable(digits = 3)
 ```
 
+The endpoints corresponding to the median pH in the tested soils
+are shown below.
+
+```{r dependson = "parent-best-pH"}
+endpoints(parent_best_pH_2)
+```
+
 ```{r}
 stopCluster(cl)
 ```
@@ -280,6 +286,13 @@ plot(path_1_refined)
 parms(path_1_refined, ci = TRUE) |> kable(digits = 3)
 ```
 
+The pathway endpoints corresponding to the median pH in the tested soils
+are shown below.
+
+```{r dependson = "parent-best-pH"}
+endpoints(parent_best_pH_2)
+```
+
 ```{r}
 stopCluster(cl)
 ```
@@ -324,7 +337,6 @@ tex_listing(path_1_refined,
 ## Session info
 
 ```{r echo = FALSE, cache = FALSE}
-parallel::stopCluster(cl)
 sessionInfo()
 ```
 
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