From ef7ccf68e086bac3e75858bd4b97e3a2c6872aa1 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 28 Jun 2016 00:44:48 +0200 Subject: Avoid multicore fits in vignettes for passing CRAN checks Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs. --- inst/web/mmkin.html | 30 +++++++++++++++++++++--------- 1 file changed, 21 insertions(+), 9 deletions(-) (limited to 'inst/web/mmkin.html') diff --git a/inst/web/mmkin.html b/inst/web/mmkin.html index 754be268..b3e7a6fd 100644 --- a/inst/web/mmkin.html +++ b/inst/web/mmkin.html @@ -2,7 +2,7 @@ -mmkin. mkin 0.9.42 +mmkin. mkin 0.9.43
- mkin 0.9.42 + mkin 0.9.43
  • Index
    • @@ -107,24 +107,36 @@

    Examples

    ## Not run: 
-# m_synth_SFO_lin <- mkinmod(parent = list(type = "SFO", to = "M1"),
-#                            M1 = list(type = "SFO", to = "M2"),
-#                            M2 = list(type = "SFO"), use_of_ff = "max")
+# m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
+#                            M1 = mkinsub("SFO", "M2"),
+#                            M2 = mkinsub("SFO"), use_of_ff = "max")
 # 
-# m_synth_FOMC_lin <- mkinmod(parent = list(type = "FOMC", to = "M1"),
-#                            M1 = list(type = "SFO", to = "M2"),
-#                            M2 = list(type = "SFO"), use_of_ff = "max")
+# m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),
+#                             M1 = mkinsub("SFO", "M2"),
+#                             M2 = mkinsub("SFO"), use_of_ff = "max")
 # 
 # models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
 # datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
+# names(datasets) <- paste("Dataset", 1:3)
 # 
-# time_default <- system.time(fits <- mmkin(models, datasets))
+# time_default <- system.time(fits.0 <- mmkin(models, datasets))
 # time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1))
 # 
 # time_default
 # time_1
 # 
 # endpoints(fits[["SFO_lin", 2]])
+# 
+# # Plot.mkinfit handles rows or columns of mmkin result objects
+# plot(fits.0[1, ])
+# plot(fits.0[1, ], obs_var = c("M1", "M2"))
+# plot(fits.0[, 1])
+# # Use double brackets to extract a single mkinfit object, which will be plotted
+# # by plot.mkinfit
+# plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
+# # Plotting with mmkin (single brackets, extracting an mmkin object) does not
+# # allow to plot the observed variables separately
+# plot(fits.0[1, 1])
 # ## End(Not run)
-- cgit v1.2.1