plot.mkinfit. mkin 0.9-41

Usage

"plot"(x, fit = x, obs_vars = names(fit$mkinmod$map), xlab = "Time", ylab = "Observed",  xlim = range(fit$data$time), ylim = "default", col_obs = 1:length(fit$mkinmod$map), pch_obs = col_obs,  lty_obs = rep(1, length(fit$mkinmod$map)), add = FALSE, legend = !add, show_residuals = FALSE, maxabs = "auto", lpos = "topright", inset = c(0.05, 0.05), ...)

+ +

Arguments

x: + Alias for fit introduced for compatibility with the generic S3 method. +
fit: + an object of class mkinfit. +
obs_vars: + A character vector of names of the observed variables for which the + data and the model should be plotted. Defauls to all observed variables + in the model. +
xlab: + label for the x axis. +
ylab: + label for the y axis. +
xlim: + plot range in x direction. +
ylim: + plot range in y direction. +
col_obs: + colors used for plotting the observed data and the corresponding model prediction lines. +
pch_obs: + symbols to be used for plotting the data. +
lty_obs: + line types to be used for the model predictions. +
add: + should the plot be added to an existing plot? +
legend: + should a legend be added to the plot? +
show_residuals: + should residuals be shown in the lower third of the plot? +
maxabs: + Maximum absolute value of the residuals. This is used for the scaling of + the y axis and defaults to "auto". +
lpos: + position of the legend. Passed to legend as the first argument. +
inset: + Passed to legend if applicable. +
...: + further arguments passed to plot. +

+ +

Description

+ +

Solves the differential equations with the optimised and fixed parameters + from a previous successful call to mkinfit and plots + the observed data together with the solution of the fitted model.

+ +

Value

+ +

+ The function is called for its side effect. +

+ +

Examples

# One parent compound, one metabolite, both single first order, path from
+# parent to sink included
+SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
+                   m1 = mkinsub("SFO", full = "Metabolite M1" ))
+
+Successfully compiled differential equation model from auto-generated C code.
+fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
+plot(fit)
+
+

+ + + +

Author