From 804a5cb47fcdc823d41c585729ace151b283ca65 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 4 Aug 2023 13:27:41 +0200 Subject: Mesotrione data and vignette The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. --- log/check.log | 21 +++++++++++++-------- 1 file changed, 13 insertions(+), 8 deletions(-) (limited to 'log/check.log') diff --git a/log/check.log b/log/check.log index 970fbc7a..fedb0bd9 100644 --- a/log/check.log +++ b/log/check.log @@ -1,5 +1,5 @@ * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’ -* using R version 4.3.0 Patched (2023-05-18 r84448) +* using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Debian 12.2.0-14) 12.2.0 @@ -9,9 +9,9 @@ * using options ‘--no-tests --as-cran’ * checking for file ‘mkin/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘mkin’ version ‘1.2.4’ +* this is package ‘mkin’ version ‘1.2.5’ * package encoding: UTF-8 -* checking CRAN incoming feasibility ... [2s/10s] Note_to_CRAN_maintainers +* checking CRAN incoming feasibility ... [3s/12s] Note_to_CRAN_maintainers Maintainer: ‘Johannes Ranke ’ * checking package namespace information ... OK * checking package dependencies ... OK @@ -45,7 +45,7 @@ Maintainer: ‘Johannes Ranke ’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK -* checking R code for possible problems ... OK +* checking R code for possible problems ... [15s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK @@ -62,17 +62,22 @@ Maintainer: ‘Johannes Ranke ’ * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... OK +* checking examples ... [18s/18s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK -* checking re-building of vignette outputs ... OK +* checking re-building of vignette outputs ... [17s/17s] OK * checking PDF version of manual ... OK -* checking HTML version of manual ... OK +* checking HTML version of manual ... NOTE +Skipping checking math rendering: package 'V8' unavailable * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE -Status: OK +Status: 1 NOTE +See + ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ +for details. + -- cgit v1.2.1 From 71d2f67189eaaad9b8d61d0f5c709f8d7be65a68 Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Tue, 8 Aug 2023 16:56:59 +0200 Subject: Update docs, check and test on RStudio server --- log/check.log | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) (limited to 'log/check.log') diff --git a/log/check.log b/log/check.log index fedb0bd9..64457e57 100644 --- a/log/check.log +++ b/log/check.log @@ -1,17 +1,17 @@ -* using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’ +* using log directory ‘/home/agsad.admin.ch/f80868656/projects/mkin/mkin.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by - gcc (Debian 12.2.0-14) 12.2.0 - GNU Fortran (Debian 12.2.0-14) 12.2.0 -* running under: Debian GNU/Linux 12 (bookworm) + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * using options ‘--no-tests --as-cran’ * checking for file ‘mkin/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mkin’ version ‘1.2.5’ * package encoding: UTF-8 -* checking CRAN incoming feasibility ... [3s/12s] Note_to_CRAN_maintainers +* checking CRAN incoming feasibility ... [5s/26s] Note_to_CRAN_maintainers Maintainer: ‘Johannes Ranke ’ * checking package namespace information ... OK * checking package dependencies ... OK @@ -45,7 +45,7 @@ Maintainer: ‘Johannes Ranke ’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK -* checking R code for possible problems ... [15s/15s] OK +* checking R code for possible problems ... [14s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK @@ -62,22 +62,22 @@ Maintainer: ‘Johannes Ranke ’ * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... [18s/18s] OK +* checking examples ... [20s/22s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK -* checking re-building of vignette outputs ... [17s/17s] OK +* checking re-building of vignette outputs ... [17s/18s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... NOTE -Skipping checking math rendering: package 'V8' unavailable +Skipping checking HTML validation: no command 'tidy' found * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See - ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ + ‘/home/agsad.admin.ch/f80868656/projects/mkin/mkin.Rcheck/00check.log’ for details. -- cgit v1.2.1