From 548b67e5d54e78150cfc6474ad129af9408f4997 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 23 Jun 2015 11:17:27 +0200
Subject: Hopefully fix compiling on Solaris, verbose option

- Only declare the time variable in the C code when needed in the
  derivatives.
- Add the option to show verbose output of cfunction() when compiling
  the model to a shared library.
---
 man/mkinmod.Rd | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

(limited to 'man/mkinmod.Rd')

diff --git a/man/mkinmod.Rd b/man/mkinmod.Rd
index f6a8fe5d..35372919 100644
--- a/man/mkinmod.Rd
+++ b/man/mkinmod.Rd
@@ -13,7 +13,7 @@
   in the FOCUS and NAFTA guidance documents are used.
 }
 \usage{
-mkinmod(..., use_of_ff = "min", speclist = NULL, quiet = FALSE)
+mkinmod(..., use_of_ff = "min", speclist = NULL, quiet = FALSE, verbose = FALSE)
 }
 \arguments{
   \item{...}{
@@ -45,6 +45,10 @@ mkinmod(..., use_of_ff = "min", speclist = NULL, quiet = FALSE)
   \item{quiet}{
     Should messages be suppressed?
   }
+  \item{verbose}{
+    If \code{TRUE}, passed to \code{\link{cfunction}} if applicable to give
+    detailed information about the C function being built.
+  }
 }
 \value{
   A list of class \code{mkinmod} for use with \code{\link{mkinfit}}, containing 
@@ -80,7 +84,7 @@ mkinmod(..., use_of_ff = "min", speclist = NULL, quiet = FALSE)
 # Specify the SFO model (this is not needed any more, as we can now mkinfit("SFO", ...)
 SFO <- mkinmod(parent = list(type = "SFO"))
 
-# One parent compound, one metabolite, both single first order.
+# One parent compound, one metabolite, both single first order
 SFO_SFO <- mkinmod(
   parent = mkinsub("SFO", "m1"),
   m1 = mkinsub("SFO"))
@@ -90,6 +94,11 @@ SFO_SFO <- mkinmod(
   parent = list(type = "SFO", to = "m1"),
   m1 = list(type = "SFO"))
 
+# Show details of creating the C function
+SFO_SFO <- mkinmod(
+  parent = mkinsub("SFO", "m1"),
+  m1 = mkinsub("SFO"), verbose = TRUE)
+
 # If we have several parallel metabolites 
 # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)
 m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
-- 
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