From 405cde11f9f26fcab0742e84c110cf3dcb2a4c1f Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 30 Mar 2020 14:03:51 +0200
Subject: First nlme fits for models with a metabolite

---
 man/mkinpredict.Rd | 57 +++++++++++++++++++++++++++++++++++++++---------------
 1 file changed, 41 insertions(+), 16 deletions(-)

(limited to 'man/mkinpredict.Rd')

diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd
index 53f02dea..17d7ef21 100644
--- a/man/mkinpredict.Rd
+++ b/man/mkinpredict.Rd
@@ -6,22 +6,47 @@
 \alias{mkinpredict.mkinfit}
 \title{Produce predictions from a kinetic model using specific parameters}
 \usage{
-mkinpredict(x, odeparms, odeini, outtimes = seq(0, 120, by = 0.1),
-  solution_type = "deSolve", use_compiled = "auto",
-  method.ode = "lsoda", atol = 1e-08, rtol = 1e-10,
-  map_output = TRUE, ...)
-
-\method{mkinpredict}{mkinmod}(x, odeparms = c(k_parent_sink = 0.1),
-  odeini = c(parent = 100), outtimes = seq(0, 120, by = 0.1),
-  solution_type = "deSolve", use_compiled = "auto",
-  method.ode = "lsoda", atol = 1e-08, rtol = 1e-10,
-  map_output = TRUE, ...)
-
-\method{mkinpredict}{mkinfit}(x, odeparms = x$bparms.ode,
-  odeini = x$bparms.state, outtimes = seq(0, 120, by = 0.1),
-  solution_type = "deSolve", use_compiled = "auto",
-  method.ode = "lsoda", atol = 1e-08, rtol = 1e-10,
-  map_output = TRUE, ...)
+mkinpredict(
+  x,
+  odeparms,
+  odeini,
+  outtimes = seq(0, 120, by = 0.1),
+  solution_type = "deSolve",
+  use_compiled = "auto",
+  method.ode = "lsoda",
+  atol = 1e-08,
+  rtol = 1e-10,
+  map_output = TRUE,
+  ...
+)
+
+\method{mkinpredict}{mkinmod}(
+  x,
+  odeparms = c(k_parent_sink = 0.1),
+  odeini = c(parent = 100),
+  outtimes = seq(0, 120, by = 0.1),
+  solution_type = "deSolve",
+  use_compiled = "auto",
+  method.ode = "lsoda",
+  atol = 1e-08,
+  rtol = 1e-10,
+  map_output = TRUE,
+  ...
+)
+
+\method{mkinpredict}{mkinfit}(
+  x,
+  odeparms = x$bparms.ode,
+  odeini = x$bparms.state,
+  outtimes = seq(0, 120, by = 0.1),
+  solution_type = "deSolve",
+  use_compiled = "auto",
+  method.ode = "lsoda",
+  atol = 1e-08,
+  rtol = 1e-10,
+  map_output = TRUE,
+  ...
+)
 }
 \arguments{
 \item{x}{A kinetic model as produced by \code{\link{mkinmod}}, or a kinetic
-- 
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