From d5ff53448c61134c46cc4df9ea88fd86fa376d66 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 17 Feb 2023 14:44:29 +0100 Subject: Finish adapting to upcoming deSolve --- man/mkinpredict.Rd | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) (limited to 'man/mkinpredict.Rd') diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd index d93c0753..ad749fa4 100644 --- a/man/mkinpredict.Rd +++ b/man/mkinpredict.Rd @@ -21,7 +21,6 @@ mkinpredict(x, odeparms, odeini, outtimes, ...) maxsteps = 20000L, map_output = TRUE, na_stop = TRUE, - call_lsoda = NULL, ... ) @@ -69,7 +68,8 @@ parent compound.} \link{mkinmod} model is used, even if is present.} \item{method.ode}{The solution method passed via \link{mkinpredict} to \link{ode}] in -case the solution type is "deSolve" and we are not using compiled code.} +case the solution type is "deSolve" and we are not using compiled code. +When using compiled code, only lsoda is supported.} \item{atol}{Absolute error tolerance, passed to the ode solver.} @@ -83,8 +83,6 @@ FALSE). Setting this to FALSE has no effect for analytical solutions, as these always return mapped output.} \item{na_stop}{Should it be an error if \link{ode} returns NaN values} - -\item{call_lsoda}{The address of the compiled function "call_lsoda"} } \value{ A matrix with the numeric solution in wide format @@ -111,11 +109,11 @@ mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20, mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20, solution_type = "analytical")[21,] mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20, - method = "lsoda")[21,] + method = "lsoda", use_compiled = FALSE)[21,] mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20, - method = "ode45")[21,] + method = "ode45", use_compiled = FALSE)[21,] mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20, - method = "rk4")[21,] + method = "rk4", use_compiled = FALSE)[21,] # rk4 is not as precise here # The number of output times used to make a lot of difference until the -- cgit v1.2.1