From 082be7baa35d7e8131a70ca8cc061d90e08fa584 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 15 Apr 2020 01:27:02 +0200
Subject: A plot method for nlme.mmkin fits

---
 man/plot.nlme.mmkin.Rd | 67 ++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 67 insertions(+)
 create mode 100644 man/plot.nlme.mmkin.Rd

(limited to 'man/plot.nlme.mmkin.Rd')

diff --git a/man/plot.nlme.mmkin.Rd b/man/plot.nlme.mmkin.Rd
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+++ b/man/plot.nlme.mmkin.Rd
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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/plot.nlme.mmkin.R
+\name{plot.nlme.mmkin}
+\alias{plot.nlme.mmkin}
+\title{Plot a fitted nonlinear mixed model obtained via an mmkin row object}
+\usage{
+\method{plot}{nlme.mmkin}(
+  x,
+  i = 1:ncol(x$mmkin_orig),
+  main = "auto",
+  legends = 1,
+  resplot = c("time", "errmod"),
+  standardized = FALSE,
+  cex = 0.7,
+  rel.height.middle = 0.9,
+  ymax = "auto",
+  ...
+)
+}
+\arguments{
+\item{x}{An object of class \code{\link{nlme.mmkin}}}
+
+\item{i}{A numeric index to select datasets for which to plot the nlme fit,
+in case plots get too large}
+
+\item{main}{The main title placed on the outer margin of the plot.}
+
+\item{legends}{An index for the fits for which legends should be shown.}
+
+\item{resplot}{Should the residuals plotted against time, using
+\code{\link{mkinresplot}}, or as squared residuals against predicted
+values, with the error model, using \code{\link{mkinerrplot}}.}
+
+\item{standardized}{Should the residuals be standardized? This option
+is passed to \code{\link{mkinresplot}}, it only takes effect if
+`resplot = "time"`.}
+
+\item{cex}{Passed to the plot functions and \code{\link{mtext}}.}
+
+\item{rel.height.middle}{The relative height of the middle plot, if more
+than two rows of plots are shown.}
+
+\item{ymax}{Maximum y axis value for \code{\link{plot.mkinfit}}.}
+
+\item{\dots}{Further arguments passed to \code{\link{plot.mkinfit}} and
+\code{\link{mkinresplot}}.}
+}
+\value{
+The function is called for its side effect.
+}
+\description{
+Plot a fitted nonlinear mixed model obtained via an mmkin row object
+}
+\examples{
+ds <- lapply(experimental_data_for_UBA_2019[6:10],
+ function(x) subset(x$data[c("name", "time", "value")], name == "parent"))
+f <- mmkin("SFO", ds, quiet = TRUE, cores = 1)
+#plot(f) # too many panels for pkgdown
+library(nlme)
+f_nlme <- nlme(f)
+
+#plot(f_nlme) # too many panels for pkgdown
+plot(f_nlme, 1:2)
+}
+\author{
+Johannes Ranke
+}
-- 
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