From 37bffdcfab0ca4e0de638b1a63e808b1d29d3f15 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 28 Feb 2022 14:38:23 +0100 Subject: Add nlmixr tests, reorganize, test intervals() --- test.log | 41 ++++++++++++++++++++++------------------- 1 file changed, 22 insertions(+), 19 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index e6ab6d6d..5a9e0034 100644 --- a/test.log +++ b/test.log @@ -7,38 +7,41 @@ Loading required package: parallel ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 14 | Error model fitting [4.8s] +⠋ | 1 | Dimethenamid data from 2018, parent fits +✔ | 24 | Dimethenamid data from 2018, parent fits [36.7s] +✔ | 14 | Error model fitting [6.8s] ✔ | 5 | Time step normalisation -✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] -✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] -✔ | 1 | Fitting the logistic model [0.2s] -✔ | 1 35 | Nonlinear mixed-effects models [26.8s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.8s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.5s] +✔ | 1 | Fitting the logistic model [0.3s] +✔ | 1 12 | Nonlinear mixed-effects models [0.2s] ──────────────────────────────────────────────────────────────────────────────── -Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits +Skip (test_mixed.R:67:3): saemix results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── ✔ | 2 | Test dataset classes mkinds and mkindsg -✔ | 10 | Special cases of mkinfit calls [0.4s] -✔ | 1 | mkinfit features [0.3s] +✔ | 10 | Special cases of mkinfit calls [0.6s] +✔ | 1 | mkinfit features [0.5s] ✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.4s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] -✔ | 16 | Plotting [1.3s] +✔ | 3 | Model predictions with mkinpredict [0.3s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.1s] +✔ | 9 | Nonlinear mixed-effects models with nlme [9.4s] +✔ | 16 | Plotting [1.5s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s] -✔ | 7 | Fitting the SFORB model [3.9s] +✔ | 23 | saemix_parent [29.2s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.7s] +✔ | 7 | Fitting the SFORB model [4.4s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s] -✔ | 9 | Hypothesis tests [8.6s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s] +✔ | 9 | Hypothesis tests [9.5s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 69.5 s +Duration: 115.5 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ] +[ FAIL 0 | WARN 0 | SKIP 1 | PASS 230 ] -- cgit v1.2.1