From 3a5463672c297b37c3c9135c8b144c48744c05d0 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 31 Mar 2021 19:42:17 +0200 Subject: Bug fix in plot.mkinfit In residual plots, use xlab and xlim if appropriate --- test.log | 33 +++++++++++++++++++++++++-------- 1 file changed, 25 insertions(+), 8 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index 80b64269..b49088e5 100644 --- a/test.log +++ b/test.log @@ -3,14 +3,14 @@ Loading required package: parallel Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 2 | Export dataset for reading into CAKE [0.2 s] +✔ | 2 | Export dataset for reading into CAKE ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s] ✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] -✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 7 | Fitting the SFORB model [3.5 s] ✔ | 5 | Analytical solutions for coupled models [3.1 s] ✔ | 5 | Calculation of Akaike weights -✔ | 12 | Confidence intervals and p-values [1.1 s] -✔ | 14 | Error model fitting [4.1 s] +✔ | 12 | Confidence intervals and p-values [1.0 s] +✔ | 14 | Error model fitting [4.2 s] ✔ | 5 | Time step normalisation ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] @@ -19,10 +19,27 @@ Testing mkin ✔ | 1 | mkinfit features [0.3 s] ✔ | 10 | Special cases of mkinfit calls [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] -✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 3 | Model predictions with mkinpredict [0.4 s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6 s] ✔ | 9 | Nonlinear mixed-effects models [7.9 s] -✔ | 14 | Plotting [1.7 s] +✖ | 10 4 | Plotting [1.7 s] +──────────────────────────────────────────────────────────────────────────────── +Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg + + +Failure (test_plot.R:21:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: plot-res-for-focus-c.svg + + +Failure (test_plot.R:22:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mkinfit-plot-for-focus-c-with-sep-true.svg + + +Failure (test_plot.R:30:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: plot-res-for-focus-d.svg + +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] ✔ | 4 | Summary [0.1 s] @@ -32,6 +49,6 @@ Testing mkin ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 40.9 s +Duration: 41.0 s -[ FAIL 0 | WARN 0 | SKIP 0 | PASS 174 ] +[ FAIL 4 | WARN 0 | SKIP 0 | PASS 170 ] -- cgit v1.2.1