From 47ba9ea512b82fb8b31da8ec5558f3c0952d86d4 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 2 Apr 2020 10:58:34 +0200 Subject: Compiled models article, reduce distractions - Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin() --- test.log | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index 77130814..84b13a10 100644 --- a/test.log +++ b/test.log @@ -2,35 +2,35 @@ Loading mkin Testing mkin ✔ | OK F W S | Context ✔ | 2 | Export dataset for reading into CAKE -✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.7 s] -✔ | 4 | Calculation of FOCUS chi2 error levels [2.3 s] -✔ | 4 | Fitting the SFORB model [1.8 s] +✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.5 s] +✔ | 4 | Calculation of FOCUS chi2 error levels [2.2 s] +✔ | 4 | Fitting the SFORB model [1.7 s] ✔ | 5 | Calculation of Akaike weights -✔ | 10 | Confidence intervals and p-values [10.7 s] -✔ | 14 | Error model fitting [42.8 s] -✔ | 6 | Test fitting the decline of metabolites from their maximum [0.8 s] -✔ | 1 | Fitting the logistic model [1.0 s] +✔ | 10 | Confidence intervals and p-values [9.6 s] +✔ | 14 | Error model fitting [38.4 s] +✔ | 6 | Test fitting the decline of metabolites from their maximum [0.7 s] +✔ | 1 | Fitting the logistic model [0.9 s] ✔ | 1 | Test dataset class mkinds used in gmkin -✔ | 12 | Special cases of mkinfit calls [2.5 s] +✔ | 12 | Special cases of mkinfit calls [2.2 s] ✔ | 9 | mkinmod model generation and printing [0.2 s] -✔ | 3 | Model predictions with mkinpredict [0.4 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.4 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s] +✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.2 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ✔ | 3 | Summary ✔ | 11 | Plotting [0.6 s] ✔ | 4 | AIC calculation ✔ | 2 | Residuals extracted from mkinfit models -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.7 s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.7 s] -✔ | 7 1 | Hypothesis tests [35.7 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.1 s] +✔ | 7 1 | Hypothesis tests [32.5 s] ──────────────────────────────────────────────────────────────────────────────── test_tests.R:60: skip: We can do a likelihood ratio test using an update specification Reason: This errors out if called by testthat while it works in a normal R session ──────────────────────────────────────────────────────────────────────────────── ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 123.0 s +Duration: 112.1 s OK: 138 Failed: 0 -- cgit v1.2.1