From 78884beed74c18c99521b9ceeaa643e13cf94c06 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 30 Nov 2020 14:50:33 +0100 Subject: Log-Cholesky parameterisation as default in nlme.mmkin --- test.log | 22 +++++++++++++--------- 1 file changed, 13 insertions(+), 9 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index 67fd66c4..84a8748e 100644 --- a/test.log +++ b/test.log @@ -6,11 +6,11 @@ Testing mkin ✔ | 2 | Export dataset for reading into CAKE ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s] ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] -✔ | 7 | Fitting the SFORB model [3.2 s] -✔ | 5 | Analytical solutions for coupled models [2.9 s] +✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 5 | Analytical solutions for coupled models [3.1 s] ✔ | 5 | Calculation of Akaike weights ✔ | 10 | Confidence intervals and p-values [1.0 s] -✔ | 14 | Error model fitting [4.3 s] +✔ | 14 | Error model fitting [4.4 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 1 | Test dataset class mkinds used in gmkin @@ -26,24 +26,28 @@ Reason: getRversion() < "4.1.0" is TRUE Skip (test_nafta.R:55:5): Test data from Appendix D are correctly evaluated Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── -✔ | 9 | Nonlinear mixed-effects models [7.8 s] +✖ | 7 1 | Nonlinear mixed-effects models [8.0 s] +──────────────────────────────────────────────────────────────────────────────── +FAILURE (test_nlme.R:90:3): nlme_function works correctly +`tmp <- update(m_nlme_mmkin)` did not produce any warnings. +──────────────────────────────────────────────────────────────────────────────── ✔ | 0 1 | Plotting [0.7 s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_plot.R:25:3): Plotting mkinfit and mmkin objects is reproducible Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] ✔ | 4 | Summary [0.1 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s] -✔ | 9 | Hypothesis tests [6.4 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 9 | Hypothesis tests [7.2 s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 36.9 s +Duration: 38.9 s ── Skipped tests ────────────────────────────────────────────────────────────── ● getRversion() < "4.1.0" is TRUE (3) -[ FAIL 0 | WARN 0 | SKIP 3 | PASS 146 ] +[ FAIL 1 | WARN 0 | SKIP 3 | PASS 144 ] -- cgit v1.2.1